Table 2 Regions under positive selection in the medaka genome
Chromosomal RegionGene SymbolGene DescriptionEnsembl Gene IDLocation of indicative SNP(s)
5:22601619-22654959slc41a3Solute carrier family 41ENSORLG00000011740ORF (341: Met → Val, 354 Leu → Phe), 4 intronic
5:22601619-22654959chst13Carbohydrate (chondroitin 4) sulfotransferase 13ENSORLG000000117523 intronic, ORF (syn)
5:23874411-24206161klhl10Kelch-like 10ENSORLG00000011990ORF (100: Lys → Asn; 353: Ala → Thr), 1 intronic
5:23874411-24206161txnrd3Thioredoxin reductase 3ENSORLG00000011831ORF (457: Val → Leu; syn), 4 intronic
5:23874411-24206161bin2Bridging integrator 2ENSORLG000000118694 intronic
5:23874411-24206161wnt4Wingless-type MMTV integration site family member 4aENSORLG000000120252 intronic, 1 downstream
4:5331132-5332602lrrc8cLeucine rich repeat containing 8 family, member CENSORLG000000022753 intronic
7:22770082-22774016racgap1Rac GTPase activating protein 1ENSORLG000000155401 upstream
14:2110873-2114262h2afyH2A histone family, member YENSORLG000000008507 intronic
15:24520836-24521875col19a1Collagen, type XIX, alpha 1ENSORLG000000103502 intronic
15:7870807-8785145ube2zUbiquitin-conjugating enzyme E2ZENSORLG000000017715 intronic, ORF (syn)
15:7870807-8785145rims1Regulating synaptic membrane exocytosis 1ENSORLG000000017485 intronic
18:484757-484758NovelNovel geneENSORLG000000022681 intronic
21:2870759-2888920slc39a10Solute carrier family 39 (zinc transporter), member 10ENSORLG000000087605 intronic
1:9439527-9460390NANANAGene desert
9:14217964-14319610NANANAGene desert
11:25012896-25023149NANANAGene desert
  • Chromosomal regions detected as under positive selection are given along with details of the gene(s) contained within the regions and the locations of the indicative SNP(s). SNP, single-nucleotide polymorphism; NA, not applicable.