Plant

Arabadopsis

Effector-Triggered Immune Response in Arabidopsis thaliana Is a Quantitative Trait
Open Access

Michail Iakovidis, Paulo J. P. L. Teixeira, Moises Exposito-Alonso, Matthew G. Cowper, Theresa F. Law, Qingli Liu, Minh Chau Vu, Troy Minh Dang, Jason A. Corwin, Detlef Weigel, Jeffery L. Dangl, Sarah R. Grant

Genetics September 2016 204: 337-353; https://doi.org/10.1534/genetics.116.190678
Genetic Architecture of Natural Variation of Telomere Length in Arabidopsis thaliana

Nick Fulcher, Astrid Teubenbacher, Envel Kerdaffrec, Ashley Farlow, Magnus Nordborg, Karel Riha

Genetics February 2015 199: 625-635; https://doi.org/10.1534/genetics.114.172163
The Genetic Basis of Natural Variation in Seed Size and Seed Number and Their Trade-Off Using Arabidopsis thaliana MAGIC Lines

Sebastian Gnan, Anne Priest, Paula X. Kover

Genetics December 2014 198: 1751-1758; https://doi.org/10.1534/genetics.114.170746
Comparison of Mating Designs for Establishing Nested Association Mapping Populations in Maize and Arabidopsis thaliana

Benjamin Stich

Genetics December 2009 183: 1525-1534; https://doi.org/10.1534/genetics.109.108449

Barley

Detection of Epistasis for Flowering Time Using Bayesian Multilocus Estimation in a Barley MAGIC Population
Open Access

Boby Mathew, Jens Léon, Wiebke Sannemann, Mikko J. Sillanpää

Genetics February 2018 208: 525-536; https://doi.org/10.1534/genetics.117.300546
Development and Genetic Characterization of an Advanced Backcross-Nested Association Mapping (AB-NAM) Population of Wild × Cultivated Barley

Liana M. Nice, Brian J. Steffenson, Gina L. Brown-Guedira, Eduard D. Akhunov, Chaochih Liu, Thomas J. Y. Kono, Peter L. Morrell, Thomas K. Blake, Richard D. Horsley, Kevin P. Smith, Gary J. Muehlbauer

Genetics July 2016 203: 1453-1467; https://doi.org/10.1534/genetics.116.190736

Interspecific Hybrid

Genetic Analysis of Teosinte Alleles for Kernel Composition Traits in Maize
Avinash Karn, Jason D. Gillman, Sherry A. Flint-Garcia

G3: Genes, Genomes, Genetics April 2017 7: 1157-1164; https://doi.org/10.1534/g3.117.039529
Genetic Architecture of Domestication-Related Traits in Maize

Shang Xue, Peter J. Bradbury, Terry Casstevens, James B. Holland

Genetics September 2016 204: 99-113; https://doi.org/10.1534/genetics.116.191106
Adult Plant Development in Triticale (× Triticosecale Wittmack) Is Controlled by Dynamic Genetic Patterns of Regulation
Tobias Würschum, Wenxin Liu, Katharina V. Alheit, Matthew R. Tucker, Manje Gowda, Elmar A. Weissmann, Volker Hahn, Hans Peter Maurer

G3: Genes, Genomes, Genetics September 2014 4: 1585-1591; https://doi.org/10.1534/g3.114.012989
Megabase-Scale Inversion Polymorphism in the Wild Ancestor of Maize

Zhou Fang, Tanja Pyhäjärvi, Allison L. Weber, R. Kelly Dawe, Jeffrey C. Glaubitz, José de Jesus Sánchez González, Claudia Ross-Ibarra, John Doebley, Peter L. Morrell, Jeffrey Ross-Ibarra

Genetics July 2012 191: 883-894; https://doi.org/10.1534/genetics.112.138578

Maize

Empirical Comparisons of Different Statistical Models To Identify and Validate Kernel Row Number-Associated Variants from Structured Multi-parent Mapping Populations of Maize
Jinliang Yang, Cheng-Ting “Eddy” Yeh, Raghuprakash Kastoori Ramamurthy, Xinshuai Qi, Rohan L. Fernando, Jack C. M. Dekkers, Dorian J. Garrick, Dan Nettleton, Patrick S. Schnable

G3: Genes, Genomes, Genetics November 2018 8: 3567-3575; https://doi.org/10.1534/g3.118.200636
Linkage Analysis and Association Mapping QTL Detection Models for Hybrids Between Multiparental Populations from Two Heterotic Groups: Application to Biomass Production in Maize (Zea mays L.)
Héloïse Giraud, Cyril Bauland, Matthieu Falque, Delphine Madur, Valérie Combes, Philippe Jamin, Cécile Monteil, Jacques Laborde, Carine Palaffre, Antoine Gaillard, Philippe Blanchard, Alain Charcosset, Laurence Moreau

G3: Genes, Genomes, Genetics November 2017 7: 3649-3657; https://doi.org/10.1534/g3.117.300121
Reciprocal Genetics: Identifying QTL for General and Specific Combining Abilities in Hybrids Between Multiparental Populations from Two Maize (Zea mays L.) Heterotic Groups
Open Access

Héloïse Giraud, Cyril Bauland, Matthieu Falque, Delphine Madur, Valérie Combes, Philippe Jamin, Cécile Monteil, Jacques Laborde, Carine Palaffre, Antoine Gaillard, Philippe Blanchard, Alain Charcosset, Laurence Moreau

Genetics November 2017 207: 1167-1180; https://doi.org/10.1534/genetics.117.300305
Rapid Cycling Genomic Selection in a Multiparental Tropical Maize Population
Xuecai Zhang, Paulino Pérez-Rodríguez, Juan Burgueño, Michael Olsen, Edward Buckler, Gary Atlin, Boddupalli M. Prasanna, Mateo Vargas, Félix San Vicente, José Crossa

G3: Genes, Genomes, Genetics July 2017 7: 2315-2326; https://doi.org/10.1534/g3.117.043141
Diversity of Maize Shoot Apical Meristem Architecture and Its Relationship to Plant Morphology
Addie M. Thompson, Jianming Yu, Marja C. P. Timmermans, Patrick Schnable, James E. Crants, Michael J. Scanlon, Gary J. Muehlbauer

G3: Genes, Genomes, Genetics May 2015 5: 819-827; https://doi.org/10.1534/g3.115.017541
Linkage Disequilibrium with Linkage Analysis of Multiline Crosses Reveals Different Multiallelic QTL for Hybrid Performance in the Flint and Dent Heterotic Groups of Maize

Héloïse Giraud, Christina Lehermeier, Eva Bauer, Matthieu Falque, Vincent Segura, Cyril Bauland, Christian Camisan, Laura Campo, Nina Meyer, Nicolas Ranc, Wolfgang Schipprack, Pascal Flament, Albrecht E. Melchinger, Monica Menz, Jesús Moreno-González, Milena Ouzunova, Alain Charcosset, Chris-Carolin Schön, Laurence Moreau

Genetics December 2014 198: 1717-1734; https://doi.org/10.1534/genetics.114.169367
The Genetic Architecture of Maize (Zea mays L.) Kernel Weight Determination
Santiago Alvarez Prado, César G. López, M. Lynn Senior, Lucas Borrás

G3: Genes, Genomes, Genetics September 2014 4: 1611-1621; https://doi.org/10.1534/g3.114.013243
Usefulness of Multiparental Populations of Maize (Zea mays L.) for Genome-Based Prediction

Christina Lehermeier, Nicole Krämer, Eva Bauer, Cyril Bauland, Christian Camisan, Laura Campo, Pascal Flament, Albrecht E. Melchinger, Monica Menz, Nina Meyer, Laurence Moreau, Jesús Moreno-González, Milena Ouzunova, Hubert Pausch, Nicolas Ranc, Wolfgang Schipprack, Manfred Schönleben, Hildrun Walter, Alain Charcosset, Chris-Carolin Schön

Genetics September 2014 198: 3-16; https://doi.org/10.1534/genetics.114.161943
The Genetic Architecture Of Maize Height
Open Access

Jason A. Peiffer, Maria C. Romay, Michael A. Gore, Sherry A. Flint-Garcia, Zhiwu Zhang, Mark J. Millard, Candice A. C. Gardner, Michael D. McMullen, James B. Holland, Peter J. Bradbury, Edward S. Buckler

Genetics April 2014 196: 1337-1356; https://doi.org/10.1534/genetics.113.159152
Genomic Prediction in Maize Breeding Populations with Genotyping-by-Sequencing
José Crossa, Yoseph Beyene, Semagn Kassa, Paulino Pérez, John M. Hickey, Charles Chen, Gustavo de los Campos, Juan Burgueño, Vanessa S. Windhausen, Ed Buckler, Jean-Luc Jannink, Marco A. Lopez Cruz, Raman Babu

G3: Genes, Genomes, Genetics November 2013 3: 1903-1926; https://doi.org/10.1534/g3.113.008227
A Connected Set of Genes Associated with Programmed Cell Death Implicated in Controlling the Hypersensitive Response in Maize

Bode A. Olukolu, Adisu Negeri, Rahul Dhawan, Bala P. Venkata, Pankaj Sharma, Anshu Garg, Emma Gachomo, Sandeep Marla, Kevin Chu, Anna Hasan, Jiabing Ji, Satya Chintamanani, Jason Green, Chi-Ren Shyu, Randall Wisser, James Holland, Guri Johal, Peter Balint-Kurti

Genetics February 2013 193: 609-620; https://doi.org/10.1534/genetics.112.147595
Accuracy of Across-Environment Genome-Wide Prediction in Maize Nested Association Mapping Populations
Zhigang Guo, Dominic M. Tucker, Daolong Wang, Christopher J. Basten, Elhan Ersoz, William H. Briggs, Jianwei Lu, Min Li, Gilles Gay

G3: Genes, Genomes, Genetics February 2013 3: 263-272; https://doi.org/10.1534/g3.112.005066
Comparison of Mating Designs for Establishing Nested Association Mapping Populations in Maize and Arabidopsis thaliana

Benjamin Stich

Genetics December 2009 183: 1525-1534; https://doi.org/10.1534/genetics.109.108449
Genetic Design and Statistical Power of Nested Association Mapping in Maize

Jianming Yu, James B. Holland, Michael D. McMullen, Edward S. Buckler

Genetics January 2008 178: 539-551; https://doi.org/10.1534/genetics.107.074245

Oil Palm

Identification of Ganoderma Disease Resistance Loci Using Natural Field Infection of an Oil Palm Multiparental Population
Sébastien Tisné, Virginie Pomiès, Virginie Riou, Indra Syahputra, Benoît Cochard, Marie Denis

G3: Genes, Genomes, Genetics June 2017 7: 1683-1692; https://doi.org/10.1534/g3.117.041764

Other

Genetic Architecture of Soybean Yield and Agronomic Traits
Brian W. Diers, Jim Specht, Katy Martin Rainey, Perry Cregan, Qijian Song, Vishnu Ramasubramanian, George Graef, Randall Nelson, William Schapaugh, Dechun Wang, Grover Shannon, Leah McHale, Stella K. Kantartzi, Alencar Xavier, Rouf Mian, Robert M. Stupar, Jean-Michel Michno, Yong-Qiang Charles An, Wolfgang Goettel, Russell Ward, Carolyn Fox, Alexander E. Lipka, David Hyten, Troy Cary, William D. Beavis

G3: Genes, Genomes, Genetics October 2018 8: 3367-3375; https://doi.org/10.1534/g3.118.200332
Identification of Candidate Genes Controlling Black Seed Coat and Pod Tip Color in Cowpea (Vigna unguiculata [L.] Walp)
Ira A. Herniter, María Muñoz-Amatriaín, Sassoum Lo, Yi-Ning Guo, Timothy J. Close

G3: Genes, Genomes, Genetics October 2018 8: 3347-3355; https://doi.org/10.1534/g3.118.200521
Genetic Loci Governing Androgenic Capacity in Perennial Ryegrass (Lolium perenne L.)
Rachel F. Begheyn, Steven A. Yates, Timothy Sykes, Bruno Studer

G3: Genes, Genomes, Genetics June 2018 8: 1897-1908; https://doi.org/10.1534/g3.117.300550
Dissecting the Genetic Architecture of Shoot Growth in Carrot (Daucus carota L.) Using a Diallel Mating Design
Sarah D. Turner, Paul L. Maurizio, William Valdar, Brian S. Yandell, Philipp W. Simon

G3: Genes, Genomes, Genetics February 2018 8: 411-426; https://doi.org/10.1534/g3.117.300235
Genome-Wide Analysis of Grain Yield Stability and Environmental Interactions in a Multiparental Soybean Population
Alencar Xavier, Diego Jarquin, Reka Howard, Vishnu Ramasubramanian, James E. Specht, George L. Graef, William D. Beavis, Brian W. Diers, Qijian Song, Perry B. Cregan, Randall Nelson, Rouf Mian, J. Grover Shannon, Leah McHale, Dechun Wang, William Schapaugh, Aaron J. Lorenz, Shizhong Xu, William M. Muir, Katy M. Rainey

G3: Genes, Genomes, Genetics February 2018 8: 519-529; https://doi.org/10.1534/g3.117.300300
Patterns of Genetic Structure and Linkage Disequilibrium in a Large Collection of Pea Germplasm
Mathieu Siol, Françoise Jacquin, Marianne Chabert-Martinello, Petr Smýkal, Marie-Christine Le Paslier, Grégoire Aubert, Judith Burstin

G3: Genes, Genomes, Genetics August 2017 7: 2461-2471; https://doi.org/10.1534/g3.117.043471

Rice

Discovery of QTL Alleles for Grain Shape in the Japan-MAGIC Rice Population Using Haplotype Information
Daisuke Ogawa, Yasunori Nonoue, Hiroshi Tsunematsu, Noriko Kanno, Toshio Yamamoto, Jun-ichi Yonemaru

G3: Genes, Genomes, Genetics November 2018 8: 3559-3565; https://doi.org/10.1534/g3.118.200558
Genetic Architecture of a Rice Nested Association Mapping Population
Christopher A. Fragoso, Maria Moreno, Zuoheng Wang, Christopher Heffelfinger, Lady J. Arbelaez, John A. Aguirre, Natalia Franco, Luz E. Romero, Karine Labadie, Hongyu Zhao, Stephen L. Dellaporta, Mathias Lorieux

G3: Genes, Genomes, Genetics June 2017 7: 1913-1926; https://doi.org/10.1534/g3.117.041608
Approaches in Characterizing Genetic Structure and Mapping in a Rice Multiparental Population
Chitra Raghavan, Ramil Mauleon, Vanica Lacorte, Monalisa Jubay, Hein Zaw, Justine Bonifacio, Rakesh Kumar Singh, B. Emma Huang, Hei Leung

G3: Genes, Genomes, Genetics June 2017 7: 1721-1730; https://doi.org/10.1534/g3.117.042101
Efficient Imputation of Missing Markers in Low-Coverage Genotyping-by-Sequencing Data from Multiparental Crosses

B. Emma Huang, Chitra Raghavan, Ramil Mauleon, Karl W. Broman, Hei Leung

Genetics May 2014 197: 401-404; https://doi.org/10.1534/genetics.113.158014

Sorghum

Genotyping by Sequencing of 393 Sorghum bicolor BTx623 × IS3620C Recombinant Inbred Lines Improves Sensitivity and Resolution of QTL Detection
WenQian Kong, Changsoo Kim, Dong Zhang, Hui Guo, Xu Tan, Huizhe Jin, Chengbo Zhou, Lan-shuan Shuang, Valorie Goff, Uzay Sezen, Gary Pierce, Rosana Compton, Cornelia Lemke, Jon Robertson, Lisa Rainville, Susan Auckland, Andrew H. Paterson

G3: Genes, Genomes, Genetics August 2018 8: 2563-2572; https://doi.org/10.1534/g3.118.200173
Mating Design and Genetic Structure of a Multi-Parent Advanced Generation Intercross (MAGIC) Population of Sorghum (Sorghum bicolor (L.) Moench)
Patrick O. Ongom, Gebisa Ejeta

G3: Genes, Genomes, Genetics January 2018 8: 331-341; https://doi.org/10.1534/g3.117.300248
Increased Power To Dissect Adaptive Traits in Global Sorghum Diversity Using a Nested Association Mapping Population
Open Access

Sophie Bouchet, Marcus O. Olatoye, Sandeep R. Marla, Ramasamy Perumal, Tesfaye Tesso, Jianming Yu, Mitch Tuinstra, Geoffrey P. Morris

Genetics June 2017 206: 573-585; https://doi.org/10.1534/genetics.116.198499
A Genomic Resource for the Development, Improvement, and Exploitation of Sorghum for Bioenergy
Open Access

Zachary W. Brenton, Elizabeth A. Cooper, Mathew T. Myers, Richard E. Boyles, Nadia Shakoor, Kelsey J. Zielinski, Bradley L. Rauh, William C. Bridges, Geoffrey P. Morris, Stephen Kresovich

Genetics September 2016 204: 21-33; https://doi.org/10.1534/genetics.115.183947
Multiparental Mapping of Plant Height and Flowering Time QTL in Partially Isogenic Sorghum Families
R. H. Higgins, C. S. Thurber, I. Assaranurak, P. J. Brown

G3: Genes, Genomes, Genetics September 2014 4: 1593-1602; https://doi.org/10.1534/g3.114.013318

Strawberry

Pedigree-Based Analysis in a Multiparental Population of Octoploid Strawberry Reveals QTL Alleles Conferring Resistance to Phytophthora cactorum
Jozer Mangandi, Sujeet Verma, Luis Osorio, Natalia A. Peres, Eric van de Weg, Vance M. Whitaker

G3: Genes, Genomes, Genetics June 2017 7: 1707-1719; https://doi.org/10.1534/g3.117.042119

Sunflower

Development of a 10,000 Locus Genetic Map of the Sunflower Genome Based on Multiple Crosses
John E. Bowers, Eleni Bachlava, Robert L. Brunick, Loren H. Rieseberg, Steven J. Knapp, John M. Burke

G3: Genes, Genomes, Genetics July 2012 2: 721-729; https://doi.org/10.1534/g3.112.002659

Tomato

Genome-Wide Association Mapping in Tomato (Solanum lycopersicum) Is Possible Using Genome Admixture of Solanum lycopersicum var. cerasiforme
Nicolas Ranc, Stephane Muños, Jiaxin Xu, Marie-Christine Le Paslier, Aurélie Chauveau, Rémi Bounon, Sophie Rolland, Jean-Paul Bouchet, Dominique Brunel, Mathilde Causse

G3: Genes, Genomes, Genetics August 2012 2: 853-864; https://doi.org/10.1534/g3.112.002667

Wheat

Characterizing Uncertainty in High-Density Maps from Multiparental Populations

Daniel Ahfock, Ian Wood, Stuart Stephen, Colin R. Cavanagh, B. Emma Huang

Genetics September 2014 198: 117-128; https://doi.org/10.1534/genetics.114.167577
Efficiently Tracking Selection in a Multiparental Population: The Case of Earliness in Wheat

StÈphanie ThÈpot, Gwendal Restoux, Isabelle Goldringer, FrÈdÈric Hospital, David Gouache, Ian Mackay, JÈrÙme Enjalbert

Genetics February 2015 199: 609-623; https://doi.org/10.1534/genetics.114.169995
Multiple Quantitative Trait Analysis Using Bayesian Networks

Marco Scutari, Phil Howell, David J. Balding, Ian Mackay

Genetics September 2014 198: 129-137; https://doi.org/10.1534/genetics.114.165704
Whole-Genome Analysis of Multienvironment or Multitrait QTL in MAGIC
Arunas P. Verbyla, Colin R. Cavanagh, Klara L. Verbyla

G3: Genes, Genomes, Genetics September 2014 4: 1569-1584; https://doi.org/10.1534/g3.114.012971
An Eight-Parent Multiparent Advanced Generation Inter-Cross Population for Winter-Sown Wheat: Creation, Properties, and Validation
Ian J. Mackay, Pauline Bansept-Basler, Toby Barber, Alison R. Bentley, James Cockram, Nick Gosman, Andy J. Greenland, Richard Horsnell, Rhian Howells, Donal M. OíSullivan, Gemma A. Rose, Phil J. Howell

G3: Genes, Genomes, Genetics September 2014 4: 1603-1610; https://doi.org/10.1534/g3.114.012963
Fine-Mapping the Wheat Snn1 Locus Conferring Sensitivity to the Parastagonospora nodorum Necrotrophic Effector SnTox1 Using an Eight Founder Multiparent Advanced Generation Inter-Cross Population
James Cockram, Alice Scuderi, Toby Barber, Eiko Furuki, Keith A. Gardner, Nick Gosman, Radoslaw Kowalczyk, Huyen P. Phan, Gemma A. Rose, Kar-Chun Tan, Richard P. Oliver, Ian J. Mackay

G3: Genes, Genomes, Genetics November 2015 5: 2257-2266; https://doi.org/10.1534/g3.115.021584
Wheat Landrace Genome Diversity
Open Access

Luzie U. Wingen, Claire West, Michelle Leverington-Waite, Sarah Collier, Simon Orford, Richard Goram, Cai-Yun Yang, Julie King, Alexandra M. Allen, Amanda Burridge, Keith J. Edwards, Simon Griffiths

Genetics April 2017 205: 1657-1676; https://doi.org/10.1534/genetics.116.194688

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