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G3: Genes | Genomes | Genetics

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Plant

Arabadopsis return to top

  • Effector-Triggered Immune Response in Arabidopsis thaliana Is a Quantitative Trait
    Open Access
    Michail Iakovidis, Paulo J. P. L. Teixeira, Moises Exposito-Alonso, Matthew G. Cowper, Theresa F. Law, Qingli Liu, Minh Chau Vu, Troy Minh Dang, Jason A. Corwin, Detlef Weigel, Jeffery L. Dangl, Sarah R. Grant
    Genetics September 2016 204: 337-353; https://doi.org/10.1534/genetics.116.190678
  • Genetic Architecture of Natural Variation of Telomere Length in Arabidopsis thaliana
     
    Nick Fulcher, Astrid Teubenbacher, Envel Kerdaffrec, Ashley Farlow, Magnus Nordborg, Karel Riha
    Genetics February 2015 199: 625-635; https://doi.org/10.1534/genetics.114.172163
  • The Genetic Basis of Natural Variation in Seed Size and Seed Number and Their Trade-Off Using Arabidopsis thaliana MAGIC Lines
     
    Sebastian Gnan, Anne Priest, Paula X. Kover
    Genetics December 2014 198: 1751-1758; https://doi.org/10.1534/genetics.114.170746
  • Comparison of Mating Designs for Establishing Nested Association Mapping Populations in Maize and Arabidopsis thaliana
     
    Benjamin Stich
    Genetics December 2009 183: 1525-1534; https://doi.org/10.1534/genetics.109.108449

Barley return to top

  • Detection of Epistasis for Flowering Time Using Bayesian Multilocus Estimation in a Barley MAGIC Population
    Open Access
    Boby Mathew, Jens Léon, Wiebke Sannemann, Mikko J. Sillanpää
    Genetics February 2018 208: 525-536; https://doi.org/10.1534/genetics.117.300546
  • Development and Genetic Characterization of an Advanced Backcross-Nested Association Mapping (AB-NAM) Population of Wild × Cultivated Barley
     
    Liana M. Nice, Brian J. Steffenson, Gina L. Brown-Guedira, Eduard D. Akhunov, Chaochih Liu, Thomas J. Y. Kono, Peter L. Morrell, Thomas K. Blake, Richard D. Horsley, Kevin P. Smith, Gary J. Muehlbauer
    Genetics July 2016 203: 1453-1467; https://doi.org/10.1534/genetics.116.190736

Interspecific Hybrid return to top

  • Genetic Analysis of Teosinte Alleles for Kernel Composition Traits in Maize
    Avinash Karn, Jason D. Gillman, Sherry A. Flint-Garcia
    G3: Genes, Genomes, Genetics April 2017 7: 1157-1164; https://doi.org/10.1534/g3.117.039529
  • Genetic Architecture of Domestication-Related Traits in Maize
     
    Shang Xue, Peter J. Bradbury, Terry Casstevens, James B. Holland
    Genetics September 2016 204: 99-113; https://doi.org/10.1534/genetics.116.191106
  • Adult Plant Development in Triticale (× Triticosecale Wittmack) Is Controlled by Dynamic Genetic Patterns of Regulation
    Tobias Würschum, Wenxin Liu, Katharina V. Alheit, Matthew R. Tucker, Manje Gowda, Elmar A. Weissmann, Volker Hahn, Hans Peter Maurer
    G3: Genes, Genomes, Genetics September 2014 4: 1585-1591; https://doi.org/10.1534/g3.114.012989
  • Megabase-Scale Inversion Polymorphism in the Wild Ancestor of Maize
     
    Zhou Fang, Tanja Pyhäjärvi, Allison L. Weber, R. Kelly Dawe, Jeffrey C. Glaubitz, José de Jesus Sánchez González, Claudia Ross-Ibarra, John Doebley, Peter L. Morrell, Jeffrey Ross-Ibarra
    Genetics July 2012 191: 883-894; https://doi.org/10.1534/genetics.112.138578

Maize return to top

  • Linkage Analysis and Association Mapping QTL Detection Models for Hybrids Between Multiparental Populations from Two Heterotic Groups: Application to Biomass Production in Maize (Zea mays L.)
    Héloïse Giraud, Cyril Bauland, Matthieu Falque, Delphine Madur, Valérie Combes, Philippe Jamin, Cécile Monteil, Jacques Laborde, Carine Palaffre, Antoine Gaillard, Philippe Blanchard, Alain Charcosset, Laurence Moreau
    G3: Genes, Genomes, Genetics November 2017 7: 3649-3657; https://doi.org/10.1534/g3.117.300121
  • Reciprocal Genetics: Identifying QTL for General and Specific Combining Abilities in Hybrids Between Multiparental Populations from Two Maize (Zea mays L.) Heterotic Groups
    Open Access
    Héloïse Giraud, Cyril Bauland, Matthieu Falque, Delphine Madur, Valérie Combes, Philippe Jamin, Cécile Monteil, Jacques Laborde, Carine Palaffre, Antoine Gaillard, Philippe Blanchard, Alain Charcosset, Laurence Moreau
    Genetics November 2017 207: 1167-1180; https://doi.org/10.1534/genetics.117.300305
  • Rapid Cycling Genomic Selection in a Multiparental Tropical Maize Population
    Xuecai Zhang, Paulino Pérez-Rodríguez, Juan Burgueño, Michael Olsen, Edward Buckler, Gary Atlin, Boddupalli M. Prasanna, Mateo Vargas, Félix San Vicente, José Crossa
    G3: Genes, Genomes, Genetics July 2017 7: 2315-2326; https://doi.org/10.1534/g3.117.043141
  • Diversity of Maize Shoot Apical Meristem Architecture and Its Relationship to Plant Morphology
    Addie M. Thompson, Jianming Yu, Marja C. P. Timmermans, Patrick Schnable, James E. Crants, Michael J. Scanlon, Gary J. Muehlbauer
    G3: Genes, Genomes, Genetics May 2015 5: 819-827; https://doi.org/10.1534/g3.115.017541
  • Linkage Disequilibrium with Linkage Analysis of Multiline Crosses Reveals Different Multiallelic QTL for Hybrid Performance in the Flint and Dent Heterotic Groups of Maize
     
    Héloïse Giraud, Christina Lehermeier, Eva Bauer, Matthieu Falque, Vincent Segura, Cyril Bauland, Christian Camisan, Laura Campo, Nina Meyer, Nicolas Ranc, Wolfgang Schipprack, Pascal Flament, Albrecht E. Melchinger, Monica Menz, Jesús Moreno-González, Milena Ouzunova, Alain Charcosset, Chris-Carolin Schön, Laurence Moreau
    Genetics December 2014 198: 1717-1734; https://doi.org/10.1534/genetics.114.169367
  • The Genetic Architecture of Maize (Zea mays L.) Kernel Weight Determination
    Santiago Alvarez Prado, César G. López, M. Lynn Senior, Lucas Borrás
    G3: Genes, Genomes, Genetics September 2014 4: 1611-1621; https://doi.org/10.1534/g3.114.013243
  • Usefulness of Multiparental Populations of Maize (Zea mays L.) for Genome-Based Prediction
     
    Christina Lehermeier, Nicole Krämer, Eva Bauer, Cyril Bauland, Christian Camisan, Laura Campo, Pascal Flament, Albrecht E. Melchinger, Monica Menz, Nina Meyer, Laurence Moreau, Jesús Moreno-González, Milena Ouzunova, Hubert Pausch, Nicolas Ranc, Wolfgang Schipprack, Manfred Schönleben, Hildrun Walter, Alain Charcosset, Chris-Carolin Schön
    Genetics September 2014 198: 3-16; https://doi.org/10.1534/genetics.114.161943
  • The Genetic Architecture Of Maize Height
    Open Access
    Jason A. Peiffer, Maria C. Romay, Michael A. Gore, Sherry A. Flint-Garcia, Zhiwu Zhang, Mark J. Millard, Candice A. C. Gardner, Michael D. McMullen, James B. Holland, Peter J. Bradbury, Edward S. Buckler
    Genetics April 2014 196: 1337-1356; https://doi.org/10.1534/genetics.113.159152
  • Genomic Prediction in Maize Breeding Populations with Genotyping-by-Sequencing
    José Crossa, Yoseph Beyene, Semagn Kassa, Paulino Pérez, John M. Hickey, Charles Chen, Gustavo de los Campos, Juan Burgueño, Vanessa S. Windhausen, Ed Buckler, Jean-Luc Jannink, Marco A. Lopez Cruz, Raman Babu
    G3: Genes, Genomes, Genetics November 2013 3: 1903-1926; https://doi.org/10.1534/g3.113.008227
  • A Connected Set of Genes Associated with Programmed Cell Death Implicated in Controlling the Hypersensitive Response in Maize
     
    Bode A. Olukolu, Adisu Negeri, Rahul Dhawan, Bala P. Venkata, Pankaj Sharma, Anshu Garg, Emma Gachomo, Sandeep Marla, Kevin Chu, Anna Hasan, Jiabing Ji, Satya Chintamanani, Jason Green, Chi-Ren Shyu, Randall Wisser, James Holland, Guri Johal, Peter Balint-Kurti
    Genetics February 2013 193: 609-620; https://doi.org/10.1534/genetics.112.147595
  • Accuracy of Across-Environment Genome-Wide Prediction in Maize Nested Association Mapping Populations
    Zhigang Guo, Dominic M. Tucker, Daolong Wang, Christopher J. Basten, Elhan Ersoz, William H. Briggs, Jianwei Lu, Min Li, Gilles Gay
    G3: Genes, Genomes, Genetics February 2013 3: 263-272; https://doi.org/10.1534/g3.112.005066
  • Comparison of Mating Designs for Establishing Nested Association Mapping Populations in Maize and Arabidopsis thaliana
     
    Benjamin Stich
    Genetics December 2009 183: 1525-1534; https://doi.org/10.1534/genetics.109.108449
  • Genetic Design and Statistical Power of Nested Association Mapping in Maize
     
    Jianming Yu, James B. Holland, Michael D. McMullen, Edward S. Buckler
    Genetics January 2008 178: 539-551; https://doi.org/10.1534/genetics.107.074245

Oil Palm return to top

  • Identification of Ganoderma Disease Resistance Loci Using Natural Field Infection of an Oil Palm Multiparental Population
    Sébastien Tisné, Virginie Pomiès, Virginie Riou, Indra Syahputra, Benoît Cochard, Marie Denis
    G3: Genes, Genomes, Genetics June 2017 7: 1683-1692; https://doi.org/10.1534/g3.117.041764

Otherreturn to top

  • Dissecting the Genetic Architecture of Shoot Growth in Carrot (Daucus carota L.) Using a Diallel Mating Design
    Sarah D. Turner, Paul L. Maurizio, William Valdar, Brian S. Yandell, Philipp W. Simon
    G3: Genes, Genomes, Genetics February 2018 8: 411-426; https://doi.org/10.1534/g3.117.300235
  • Genome-Wide Analysis of Grain Yield Stability and Environmental Interactions in a Multiparental Soybean Population
    Alencar Xavier, Diego Jarquin, Reka Howard, Vishnu Ramasubramanian, James E. Specht, George L. Graef, William D. Beavis, Brian W. Diers, Qijian Song, Perry B. Cregan, Randall Nelson, Rouf Mian, J. Grover Shannon, Leah McHale, Dechun Wang, William Schapaugh, Aaron J. Lorenz, Shizhong Xu, William M. Muir, Katy M. Rainey
    G3: Genes, Genomes, Genetics February 2018 8: 519-529; https://doi.org/10.1534/g3.117.300300
  • Patterns of Genetic Structure and Linkage Disequilibrium in a Large Collection of Pea Germplasm
    Mathieu Siol, Françoise Jacquin, Marianne Chabert-Martinello, Petr Smýkal, Marie-Christine Le Paslier, Grégoire Aubert, Judith Burstin
    G3: Genes, Genomes, Genetics August 2017 7: 2461-2471; https://doi.org/10.1534/g3.117.043471

Ricereturn to top

  • Genetic Architecture of a Rice Nested Association Mapping Population
    Christopher A. Fragoso, Maria Moreno, Zuoheng Wang, Christopher Heffelfinger, Lady J. Arbelaez, John A. Aguirre, Natalia Franco, Luz E. Romero, Karine Labadie, Hongyu Zhao, Stephen L. Dellaporta, Mathias Lorieux
    G3: Genes, Genomes, Genetics June 2017 7: 1913-1926; https://doi.org/10.1534/g3.117.041608
  • Approaches in Characterizing Genetic Structure and Mapping in a Rice Multiparental Population
    Chitra Raghavan, Ramil Mauleon, Vanica Lacorte, Monalisa Jubay, Hein Zaw, Justine Bonifacio, Rakesh Kumar Singh, B. Emma Huang, Hei Leung
    G3: Genes, Genomes, Genetics June 2017 7: 1721-1730; https://doi.org/10.1534/g3.117.042101
  • Efficient Imputation of Missing Markers in Low-Coverage Genotyping-by-Sequencing Data from Multiparental Crosses
     
    B. Emma Huang, Chitra Raghavan, Ramil Mauleon, Karl W. Broman, Hei Leung
    Genetics May 2014 197: 401-404; https://doi.org/10.1534/genetics.113.158014

Sorghumreturn to top

  • Mating Design and Genetic Structure of a Multi-Parent Advanced Generation Intercross (MAGIC) Population of Sorghum (Sorghum bicolor (L.) Moench)
    Patrick O. Ongom, Gebisa Ejeta
    G3: Genes, Genomes, Genetics January 2018 8: 331-341; https://doi.org/10.1534/g3.117.300248
  • Increased Power To Dissect Adaptive Traits in Global Sorghum Diversity Using a Nested Association Mapping Population
    Open Access
    Sophie Bouchet, Marcus O. Olatoye, Sandeep R. Marla, Ramasamy Perumal, Tesfaye Tesso, Jianming Yu, Mitch Tuinstra, Geoffrey P. Morris
    Genetics June 2017 206: 573-585; https://doi.org/10.1534/genetics.116.198499
  • A Genomic Resource for the Development, Improvement, and Exploitation of Sorghum for Bioenergy
    Open Access
    Zachary W. Brenton, Elizabeth A. Cooper, Mathew T. Myers, Richard E. Boyles, Nadia Shakoor, Kelsey J. Zielinski, Bradley L. Rauh, William C. Bridges, Geoffrey P. Morris, Stephen Kresovich
    Genetics September 2016 204: 21-33; https://doi.org/10.1534/genetics.115.183947
  • Multiparental Mapping of Plant Height and Flowering Time QTL in Partially Isogenic Sorghum Families
    R. H. Higgins, C. S. Thurber, I. Assaranurak, P. J. Brown
    G3: Genes, Genomes, Genetics September 2014 4: 1593-1602; https://doi.org/10.1534/g3.114.013318

Strawberryreturn to top

  • Pedigree-Based Analysis in a Multiparental Population of Octoploid Strawberry Reveals QTL Alleles Conferring Resistance to Phytophthora cactorum
    Jozer Mangandi, Sujeet Verma, Luis Osorio, Natalia A. Peres, Eric van de Weg, Vance M. Whitaker
    G3: Genes, Genomes, Genetics June 2017 7: 1707-1719; https://doi.org/10.1534/g3.117.042119

Sunflowerreturn to top

  • Development of a 10,000 Locus Genetic Map of the Sunflower Genome Based on Multiple Crosses
    John E. Bowers, Eleni Bachlava, Robert L. Brunick, Loren H. Rieseberg, Steven J. Knapp, John M. Burke
    G3: Genes, Genomes, Genetics July 2012 2: 721-729; https://doi.org/10.1534/g3.112.002659

Tomatoreturn to top

  • Genome-Wide Association Mapping in Tomato (Solanum lycopersicum) Is Possible Using Genome Admixture of Solanum lycopersicum var. cerasiforme
    Nicolas Ranc, Stephane Muños, Jiaxin Xu, Marie-Christine Le Paslier, Aurélie Chauveau, Rémi Bounon, Sophie Rolland, Jean-Paul Bouchet, Dominique Brunel, Mathilde Causse
    G3: Genes, Genomes, Genetics August 2012 2: 853-864; https://doi.org/10.1534/g3.112.002667

Wheatreturn to top

  • Characterizing Uncertainty in High-Density Maps from Multiparental Populations
     
    Daniel Ahfock, Ian Wood, Stuart Stephen, Colin R. Cavanagh, B. Emma Huang
    Genetics September 2014 198: 117-128; https://doi.org/10.1534/genetics.114.167577
  • Efficiently Tracking Selection in a Multiparental Population: The Case of Earliness in Wheat
     
    StÈphanie ThÈpot, Gwendal Restoux, Isabelle Goldringer, FrÈdÈric Hospital, David Gouache, Ian Mackay, JÈrÙme Enjalbert
    Genetics February 2015 199: 609-623; https://doi.org/10.1534/genetics.114.169995
  • Multiple Quantitative Trait Analysis Using Bayesian Networks
     
    Marco Scutari, Phil Howell, David J. Balding, Ian Mackay
    Genetics September 2014 198: 129-137; https://doi.org/10.1534/genetics.114.165704
  • Whole-Genome Analysis of Multienvironment or Multitrait QTL in MAGIC
    Arunas P. Verbyla, Colin R. Cavanagh, Klara L. Verbyla
    G3: Genes, Genomes, Genetics September 2014 4: 1569-1584; https://doi.org/10.1534/g3.114.012971
  • An Eight-Parent Multiparent Advanced Generation Inter-Cross Population for Winter-Sown Wheat: Creation, Properties, and Validation
    Ian J. Mackay, Pauline Bansept-Basler, Toby Barber, Alison R. Bentley, James Cockram, Nick Gosman, Andy J. Greenland, Richard Horsnell, Rhian Howells, Donal M. OíSullivan, Gemma A. Rose, Phil J. Howell
    G3: Genes, Genomes, Genetics September 2014 4: 1603-1610; https://doi.org/10.1534/g3.114.012963
  • Fine-Mapping the Wheat Snn1 Locus Conferring Sensitivity to the Parastagonospora nodorum Necrotrophic Effector SnTox1 Using an Eight Founder Multiparent Advanced Generation Inter-Cross Population
    James Cockram, Alice Scuderi, Toby Barber, Eiko Furuki, Keith A. Gardner, Nick Gosman, Radoslaw Kowalczyk, Huyen P. Phan, Gemma A. Rose, Kar-Chun Tan, Richard P. Oliver, Ian J. Mackay
    G3: Genes, Genomes, Genetics November 2015 5: 2257-2266; https://doi.org/10.1534/g3.115.021584
  • Wheat Landrace Genome Diversity
    Open Access
    Luzie U. Wingen, Claire West, Michelle Leverington-Waite, Sarah Collier, Simon Orford, Richard Goram, Cai-Yun Yang, Julie King, Alexandra M. Allen, Amanda Burridge, Keith J. Edwards, Simon Griffiths
    Genetics April 2017 205: 1657-1676; https://doi.org/10.1534/genetics.116.194688
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  • Ed Buckler wins NAS Prize in Food & Agriculture
  • Epistasis: Searching for Interacting Genetic Variants Using Crosses
  • MPP People: Elizabeth King
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  • The Mischief of Mice
 
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