July 2018 Table of Contents

Investigations

• Tissue-Specific Transcriptome for Poeciliopsis prolifica Reveals Evidence for Genetic Adaptation Related to the Evolution of a Placental Fish

  Nathaniel K. Jue, Robert J. Foley, David N. Reznick, Rachel J. O’Neill, Michael J. O’Neill

  G3: Genes, Genomes, Genetics July 2018 8: 2181-2192; https://doi.org/10.1534/g3.118.200270
• Defects in the Neuroendocrine Axis Contribute to Global Development Delay in a Drosophila Model of NGLY1 Deficiency

  Tamy Portillo Rodriguez, Joshua D. Mast, Tom Hartl, Tom Lee, Peter Sand, Ethan O. Perlstein

  G3: Genes, Genomes, Genetics July 2018 8: 2193-2204; https://doi.org/10.1534/g3.118.300578
• Sex Determination in Ceratopteris richardii Is Accompanied by Transcriptome Changes That Drive Epigenetic Reprogramming of the Young Gametophyte

  Nadia M. Atallah, Olga Vitek, Federico Gaiti, Milos Tanurdzic, Jo Ann Banks

  G3: Genes, Genomes, Genetics July 2018 8: 2205-2214; https://doi.org/10.1534/g3.118.200292
• Survey of Human Chromosome 21 Gene Expression Effects on Early Development in Danio rerio

  Sarah Edie, Norann A. Zaghloul, Carmen C. Leitch, Donna K. Klinedinst, Janette Lebron, Joey F. Thole, Andrew S. McCallion, Nicholas Katsanis, Roger H. Reeves

  G3: Genes, Genomes, Genetics July 2018 8: 2215-2223; https://doi.org/10.1534/g3.118.200144
• Whole Genome Sequence and Comparative Genomics Analysis of Multi-drug Resistant Environmental Staphylococcus epidermidis ST59

  Zhen Xu, Raju Misra, Dorota Jamrozy, Gavin K. Paterson, Ronald R. Cutler, Mark A. Holmes, Saheer Gharbia, Hermine V. Mkrtchyan

  G3: Genes, Genomes, Genetics July 2018 8: 2225-2230; https://doi.org/10.1534/g3.118.200314
• Activation of Self-Incompatibility Signaling in Transgenic Arabidopsis thaliana Is Independent of AP2-Based Clathrin-Mediated Endocytosis

  Masaya Yamamoto, Takeshi Nishio, June B. Nasrallah

  G3: Genes, Genomes, Genetics July 2018 8: 2231-2239; https://doi.org/10.1534/g3.118.200231
• A High-Resolution Genetic Map for the Laboratory Rat

  John Littrell, Shirng-Wern Tsaih, Amelie Baud, Pasi Rastas, Leah Solberg-Woods, Michael J. Flister

  G3: Genes, Genomes, Genetics July 2018 8: 2241-2248; https://doi.org/10.1534/g3.118.200187
• A Simple Method for Visualization of Locus-Specific H4K20me1 Modifications in Living Caenorhabditis elegans Single Cells

  Yoichi Shinkai, Masahiro Kuramochi, Motomichi Doi

  G3: Genes, Genomes, Genetics July 2018 8: 2249-2255; https://doi.org/10.1534/g3.118.200333
• A Genome-Wide Assay Specifies Only GreA as a Transcription Fidelity Factor in Escherichia coli

  Charles C. Traverse, Howard Ochman

  G3: Genes, Genomes, Genetics July 2018 8: 2257-2264; https://doi.org/10.1534/g3.118.200209
• A Genomic Region Containing REC8 and RNF212B Is Associated with Individual Recombination Rate Variation in a Wild Population of Red Deer (Cervus elaphus)

  Susan E. Johnston, Jisca Huisman, Josephine M. Pemberton

  G3: Genes, Genomes, Genetics July 2018 8: 2265-2276; https://doi.org/10.1534/g3.118.200063
• Tissue-Specific Functions of fem-2/PP2c Phosphatase and fhod-1/formin During Caenorhabditis elegans Embryonic Morphogenesis

  Osama Refai, Ryan B. Smit, SarahBeth Votra, David Pruyne, Paul E. Mains

  G3: Genes, Genomes, Genetics July 2018 8: 2277-2290; https://doi.org/10.1534/g3.118.200274
• Predicted Glycerol 3-Phosphate Dehydrogenase Homologs and the Glycerol Kinase GlcA Coordinately Adapt to Various Carbon Sources and Osmotic Stress in Aspergillus fumigatus

  Chi Zhang, Xiuhua Meng, Huiyu Gu, Zhihua Ma, Ling Lu

  G3: Genes, Genomes, Genetics July 2018 8: 2291-2299; https://doi.org/10.1534/g3.118.200253
• GWAS by GBLUP: Single and Multimarker EMMAX and Bayes Factors, with an Example in Detection of a Major Gene for Horse Gait

  Andres Legarra, Anne Ricard, Luis Varona

  G3: Genes, Genomes, Genetics July 2018 8: 2301-2308; https://doi.org/10.1534/g3.118.200336
• Genome-Wide Search for Quantitative Trait Loci Controlling Important Plant and Flower Traits in Petunia Using an Interspecific Recombinant Inbred Population of Petunia axillaris and Petunia exserta

  Zhe Cao, Yufang Guo, Qian Yang, Yanhong He, Mohammed I. Fetouh, Ryan M. Warner, Zhanao Deng

  G3: Genes, Genomes, Genetics July 2018 8: 2309-2317; https://doi.org/10.1534/g3.118.200128
• Genomic Prediction Accounting for Genotype by Environment Interaction Offers an Effective Framework for Breeding Simultaneously for Adaptation to an Abiotic Stress and Performance Under Normal Cropping Conditions in Rice

  Manel Ben Hassen, Jérôme Bartholomé, Giampiero Valè, Tuong-Vi Cao, Nourollah Ahmadi

  G3: Genes, Genomes, Genetics July 2018 8: 2319-2332; https://doi.org/10.1534/g3.118.200098
• Dynamic Changes in Yeast Phosphatase Families Allow for Specialization in Phosphate and Thiamine Starvation

  John V. Nahas, Christine L. Iosue, Noor F. Shaik, Kathleen Selhorst, Bin Z. He, Dennis D. Wykoff

  G3: Genes, Genomes, Genetics July 2018 8: 2333-2343; https://doi.org/10.1534/g3.118.200303
• A Targeted RNAi Screen Reveals Drosophila Female-Sterile Genes That Control the Size of Germline Stem Cell Niche During Development

  Yueh Cho, Chun-Ming Lai, Kun-Yang Lin, Hwei-Jan Hsu

  G3: Genes, Genomes, Genetics July 2018 8: 2345-2354; https://doi.org/10.1534/g3.118.200355
• The domino SWI2/SNF2 Gene Product Represses Cell Death in Drosophila melanogaster

  Kaitlyn Ellis, Joanna Wardwell-Ozgo, Kenneth H. Moberg, Barry Yedvobnick

  G3: Genes, Genomes, Genetics July 2018 8: 2355-2360; https://doi.org/10.1534/g3.118.200228
• Identifying Genetic Players in Cell Sheet Morphogenesis Using a Drosophila Deficiency Screen for Genes on Chromosome 2R Involved in Dorsal Closure

  Richard D. Mortensen, Regan P. Moore, Stephanie M. Fogerson, Hellen Y. Chiou, Chimdindu V. Obinero, Neel K. Prabhu, Angela H. Wei, Janice M. Crawford, Daniel P. Kiehart

  G3: Genes, Genomes, Genetics July 2018 8: 2361-2387; https://doi.org/10.1534/g3.118.200233
• The Protein Arginine Methyltransferase PRMT-5 Regulates SER-2 Tyramine Receptor-Mediated Behaviors in Caenorhabditis elegans

  Alexander Bowitch, Kerry L. Michaels, Michael C. Yu, Denise M. Ferkey

  G3: Genes, Genomes, Genetics July 2018 8: 2389-2398; https://doi.org/10.1534/g3.118.200360
• Quantitative Morphological Variation in the Developing Drosophila Wing

  Alexis Matamoro-Vidal, Yunxian Huang, Isaac Salazar-Ciudad, Osamu Shimmi, David Houle

  G3: Genes, Genomes, Genetics July 2018 8: 2399-2409; https://doi.org/10.1534/g3.118.200372
• A Dense Linkage Map of Lake Victoria Cichlids Improved the Pundamilia Genome Assembly and Revealed a Major QTL for Sex-Determination

  Philine G. D. Feulner, Julia Schwarzer, Marcel P. Haesler, Joana I. Meier, Ole Seehausen

  G3: Genes, Genomes, Genetics July 2018 8: 2411-2420; https://doi.org/10.1534/g3.118.200207
• Genetic Analyses of Elys Mutations in Drosophila Show Maternal-Effect Lethality and Interactions with Nucleoporin Genes

  Kazuyuki Hirai, Zhuo Wang, Kohei Miura, Takaaki Hayashi, Takeshi Awasaki, Moe Wada, Yoko Keira, Hiroyuki O. Ishikawa, Kyoichi Sawamura

  G3: Genes, Genomes, Genetics July 2018 8: 2421-2431; https://doi.org/10.1534/g3.118.200361
• Key Transport and Ammonia Recycling Genes Involved in Aphid Symbiosis Respond to Host-Plant Specialization

  Dohyup Kim, Bushra F. Minhas, Hongmei Li-Byarlay, Allison K. Hansen

  G3: Genes, Genomes, Genetics July 2018 8: 2433-2443; https://doi.org/10.1534/g3.118.200297
• The Aspergillus nidulans Pyruvate Dehydrogenase Kinases Are Essential To Integrate Carbon Source Metabolism

  Laure Nicolas Annick Ries, Leandro José de Assis, Fernando José Santos Rodrigues, Camila Caldana, Marina Campos Rocha, Iran Malavazi, Özgür Bayram, Gustavo H. Goldman

  G3: Genes, Genomes, Genetics July 2018 8: 2445-2463; https://doi.org/10.1534/g3.118.200411
• The E3 Ubiquitin Ligase MIB-1 Is Necessary To Form the Nuclear Halo in Caenorhabditis elegans Sperm

  Leslie A. Herrera, Daniel A. Starr

  G3: Genes, Genomes, Genetics July 2018 8: 2465-2470; https://doi.org/10.1534/g3.118.200426
• Genomic Selection for Late Blight and Common Scab Resistance in Tetraploid Potato (Solanum tuberosum)

  Felix Enciso-Rodriguez, David Douches, Marco Lopez-Cruz, Joseph Coombs, Gustavo de los Campos

  G3: Genes, Genomes, Genetics July 2018 8: 2471-2481; https://doi.org/10.1534/g3.118.200273
• Genome-Wide Analysis of Multidrug and Toxic Compound Extrusion (MATE) Family in Gossypium raimondii and Gossypium arboreum and Its Expression Analysis Under Salt, Cadmium, and Drought Stress

  Pu Lu, Richard Odongo Magwanga, Xinlei Guo, Joy Nyangasi Kirungu, Hejun Lu, Xiaoyan Cai, Zhongli Zhou, Yangyang Wei, Xingxing Wang, Zhenmei Zhang, Renhai Peng, Kunbo Wang, Fang Liu

  G3: Genes, Genomes, Genetics July 2018 8: 2483-2500; https://doi.org/10.1534/g3.118.200232
• Bayesian Networks Predict Neuronal Transdifferentiation

  Richard I. Ainsworth, Rizi Ai, Bo Ding, Nan Li, Kai Zhang, Wei Wang

  G3: Genes, Genomes, Genetics July 2018 8: 2501-2511; https://doi.org/10.1534/g3.118.200401
• Phenotypic Data from Inbred Parents Can Improve Genomic Prediction in Pearl Millet Hybrids

  Zhikai Liang, Shashi K. Gupta, Cheng-Ting Yeh, Yang Zhang, Daniel W. Ngu, Ramesh Kumar, Hemant T. Patil, Kanulal D. Mungra, Dev Vart Yadav, Abhishek Rathore, Rakesh K. Srivastava, Rajeev Gupta, Jinliang Yang, Rajeev K. Varshney, Patrick S. Schnable, James C. Schnable

  G3: Genes, Genomes, Genetics July 2018 8: 2513-2522; https://doi.org/10.1534/g3.118.200242
• Limited Mutation-Rate Variation Within the Paramecium aurelia Species Complex

  Hongan Long, Thomas G. Doak, Michael Lynch

  G3: Genes, Genomes, Genetics July 2018 8: 2523-2526; https://doi.org/10.1534/g3.118.200420
• CORL Expression in the Drosophila Central Nervous System Is Regulated by Stage Specific Interactions of Intertwined Activators and Repressors

  Nancy L. Tran, Norma T. Takaesu, Elizabeth F. Cornell, Stuart J. Newfeld

  G3: Genes, Genomes, Genetics July 2018 8: 2527-2536; https://doi.org/10.1534/g3.118.200282
• Corrigendum

  G3: Genes, Genomes, Genetics July 2018 8: 2537; https://doi.org/10.1534/g3.118.200439