March 2014 Table of Contents

A

  1. Aizu, Tomoyuki

    1. Genomic and Phenotypic Characterization of a Wild Medaka Population: Towards the Establishment of an Isogenic Population Genetic Resource in Fish
      Mikhail Spivakov, Thomas O. Auer, Ravindra Peravali, Ian Dunham, Dirk Dolle, Asao Fujiyama, Atsushi Toyoda, Tomoyuki Aizu, Yohei Minakuchi, Felix Loosli, Kiyoshi Naruse, Ewan Birney, Joachim Wittbrodt
      G3: Genes, Genomes, Genetics March 2014 4: 433-445; https://doi.org/10.1534/g3.113.008722

  2. Atencio, David

    1. The Yeast Ess1 Prolyl Isomerase Controls Swi6 and Whi5 Nuclear Localization
      David Atencio, Cassandra Barnes, Thomas M. Duncan, Ian M. Willis, Steven D. Hanes
      G3: Genes, Genomes, Genetics March 2014 4: 523-537; https://doi.org/10.1534/g3.113.008763

  3. Auer, Thomas O.

    1. Genomic and Phenotypic Characterization of a Wild Medaka Population: Towards the Establishment of an Isogenic Population Genetic Resource in Fish
      Mikhail Spivakov, Thomas O. Auer, Ravindra Peravali, Ian Dunham, Dirk Dolle, Asao Fujiyama, Atsushi Toyoda, Tomoyuki Aizu, Yohei Minakuchi, Felix Loosli, Kiyoshi Naruse, Ewan Birney, Joachim Wittbrodt
      G3: Genes, Genomes, Genetics March 2014 4: 433-445; https://doi.org/10.1534/g3.113.008722

B

  1. Balakrishnan, Rama

    1. The Reference Genome Sequence of Saccharomyces cerevisiae: Then and Now
      Stacia R. Engel, Fred S. Dietrich, Dianna G. Fisk, Gail Binkley, Rama Balakrishnan, Maria C. Costanzo, Selina S. Dwight, Benjamin C. Hitz, Kalpana Karra, Robert S. Nash, Shuai Weng, Edith D. Wong, Paul Lloyd, Marek S. Skrzypek, Stuart R. Miyasato, Matt Simison, J. Michael Cherry
      G3: Genes, Genomes, Genetics March 2014 4: 389-398; https://doi.org/10.1534/g3.113.008995

  2. Barnes, Cassandra

    1. The Yeast Ess1 Prolyl Isomerase Controls Swi6 and Whi5 Nuclear Localization
      David Atencio, Cassandra Barnes, Thomas M. Duncan, Ian M. Willis, Steven D. Hanes
      G3: Genes, Genomes, Genetics March 2014 4: 523-537; https://doi.org/10.1534/g3.113.008763

  3. Beeler, Suzannah M.

    1. Whole-Genome DNA Methylation Profile of the Jewel Wasp (Nasonia vitripennis)
      Suzannah M. Beeler, Garrett T. Wong, Jennifer M. Zheng, Eliot C. Bush, Emily J. Remnant, Benjamin P. Oldroyd, Robert A. Drewell
      G3: Genes, Genomes, Genetics March 2014 4: 383-388; https://doi.org/10.1534/g3.113.008953

  4. Bendris, Walid

    1. Metabolic and Environmental Conditions Determine Nuclear Genomic Instability in Budding Yeast Lacking Mitochondrial DNA
      Léon Dirick, Walid Bendris, Vincent Loubiere, Thierry Gostan, Elisabeth Gueydon, Etienne Schwob
      G3: Genes, Genomes, Genetics March 2014 4: 411-423; https://doi.org/10.1534/g3.113.010108

  5. Binkley, Gail

    1. The Reference Genome Sequence of Saccharomyces cerevisiae: Then and Now
      Stacia R. Engel, Fred S. Dietrich, Dianna G. Fisk, Gail Binkley, Rama Balakrishnan, Maria C. Costanzo, Selina S. Dwight, Benjamin C. Hitz, Kalpana Karra, Robert S. Nash, Shuai Weng, Edith D. Wong, Paul Lloyd, Marek S. Skrzypek, Stuart R. Miyasato, Matt Simison, J. Michael Cherry
      G3: Genes, Genomes, Genetics March 2014 4: 389-398; https://doi.org/10.1534/g3.113.008995

  6. Birney, Ewan

    1. Genomic and Phenotypic Characterization of a Wild Medaka Population: Towards the Establishment of an Isogenic Population Genetic Resource in Fish
      Mikhail Spivakov, Thomas O. Auer, Ravindra Peravali, Ian Dunham, Dirk Dolle, Asao Fujiyama, Atsushi Toyoda, Tomoyuki Aizu, Yohei Minakuchi, Felix Loosli, Kiyoshi Naruse, Ewan Birney, Joachim Wittbrodt
      G3: Genes, Genomes, Genetics March 2014 4: 433-445; https://doi.org/10.1534/g3.113.008722

  7. Brewer, Bonita J.

    1. The Dynamics of Diverse Segmental Amplifications in Populations of Saccharomyces cerevisiae Adapting to Strong Selection
      Celia Payen, Sara C. Di Rienzi, Giang T. Ong, Jamie L. Pogachar, Joseph C. Sanchez, Anna B. Sunshine, M. K. Raghuraman, Bonita J. Brewer, Maitreya J. Dunham
      G3: Genes, Genomes, Genetics March 2014 4: 399-409; https://doi.org/10.1534/g3.113.009365

  8. Brieuc, Marine S. O.

    1. A Dense Linkage Map for Chinook salmon (Oncorhynchus tshawytscha) Reveals Variable Chromosomal Divergence After an Ancestral Whole Genome Duplication Event
      Marine S. O. Brieuc, Charles D. Waters, James E. Seeb, Kerry A. Naish
      G3: Genes, Genomes, Genetics March 2014 4: 447-460; https://doi.org/10.1534/g3.113.009316

  9. Brooks, Joseph T.

    1. Double-Strand Break Repair Assays Determine Pathway Choice and Structure of Gene Conversion Events in Drosophila melanogaster
      Anthony T. Do, Joseph T. Brooks, Margot K. Le Neveu, Jeannine R. LaRocque
      G3: Genes, Genomes, Genetics March 2014 4: 425-432; https://doi.org/10.1534/g3.113.010074

  10. Bush, Eliot C.

    1. Whole-Genome DNA Methylation Profile of the Jewel Wasp (Nasonia vitripennis)
      Suzannah M. Beeler, Garrett T. Wong, Jennifer M. Zheng, Eliot C. Bush, Emily J. Remnant, Benjamin P. Oldroyd, Robert A. Drewell
      G3: Genes, Genomes, Genetics March 2014 4: 383-388; https://doi.org/10.1534/g3.113.008953

C

  1. Chapin, Alex

    1. In Vivo Determination of Direct Targets of the Nonsense-Mediated Decay Pathway in Drosophila
      Alex Chapin, Hao Hu, Shawn G. Rynearson, Julie Hollien, Mark Yandell, Mark M. Metzstein
      G3: Genes, Genomes, Genetics March 2014 4: 485-496; https://doi.org/10.1534/g3.113.009357

  2. Cherry, J. Michael

    1. The Reference Genome Sequence of Saccharomyces cerevisiae: Then and Now
      Stacia R. Engel, Fred S. Dietrich, Dianna G. Fisk, Gail Binkley, Rama Balakrishnan, Maria C. Costanzo, Selina S. Dwight, Benjamin C. Hitz, Kalpana Karra, Robert S. Nash, Shuai Weng, Edith D. Wong, Paul Lloyd, Marek S. Skrzypek, Stuart R. Miyasato, Matt Simison, J. Michael Cherry
      G3: Genes, Genomes, Genetics March 2014 4: 389-398; https://doi.org/10.1534/g3.113.008995

  3. Costanzo, Maria C.

    1. The Reference Genome Sequence of Saccharomyces cerevisiae: Then and Now
      Stacia R. Engel, Fred S. Dietrich, Dianna G. Fisk, Gail Binkley, Rama Balakrishnan, Maria C. Costanzo, Selina S. Dwight, Benjamin C. Hitz, Kalpana Karra, Robert S. Nash, Shuai Weng, Edith D. Wong, Paul Lloyd, Marek S. Skrzypek, Stuart R. Miyasato, Matt Simison, J. Michael Cherry
      G3: Genes, Genomes, Genetics March 2014 4: 389-398; https://doi.org/10.1534/g3.113.008995

D

  1. Di Rienzi, Sara C.

    1. The Dynamics of Diverse Segmental Amplifications in Populations of Saccharomyces cerevisiae Adapting to Strong Selection
      Celia Payen, Sara C. Di Rienzi, Giang T. Ong, Jamie L. Pogachar, Joseph C. Sanchez, Anna B. Sunshine, M. K. Raghuraman, Bonita J. Brewer, Maitreya J. Dunham
      G3: Genes, Genomes, Genetics March 2014 4: 399-409; https://doi.org/10.1534/g3.113.009365

  2. Dietrich, Fred S.

    1. The Reference Genome Sequence of Saccharomyces cerevisiae: Then and Now
      Stacia R. Engel, Fred S. Dietrich, Dianna G. Fisk, Gail Binkley, Rama Balakrishnan, Maria C. Costanzo, Selina S. Dwight, Benjamin C. Hitz, Kalpana Karra, Robert S. Nash, Shuai Weng, Edith D. Wong, Paul Lloyd, Marek S. Skrzypek, Stuart R. Miyasato, Matt Simison, J. Michael Cherry
      G3: Genes, Genomes, Genetics March 2014 4: 389-398; https://doi.org/10.1534/g3.113.008995

  3. Dirick, Léon

    1. Metabolic and Environmental Conditions Determine Nuclear Genomic Instability in Budding Yeast Lacking Mitochondrial DNA
      Léon Dirick, Walid Bendris, Vincent Loubiere, Thierry Gostan, Elisabeth Gueydon, Etienne Schwob
      G3: Genes, Genomes, Genetics March 2014 4: 411-423; https://doi.org/10.1534/g3.113.010108

  4. Do, Anthony T.

    1. Double-Strand Break Repair Assays Determine Pathway Choice and Structure of Gene Conversion Events in Drosophila melanogaster
      Anthony T. Do, Joseph T. Brooks, Margot K. Le Neveu, Jeannine R. LaRocque
      G3: Genes, Genomes, Genetics March 2014 4: 425-432; https://doi.org/10.1534/g3.113.010074

  5. Dolle, Dirk

    1. Genomic and Phenotypic Characterization of a Wild Medaka Population: Towards the Establishment of an Isogenic Population Genetic Resource in Fish
      Mikhail Spivakov, Thomas O. Auer, Ravindra Peravali, Ian Dunham, Dirk Dolle, Asao Fujiyama, Atsushi Toyoda, Tomoyuki Aizu, Yohei Minakuchi, Felix Loosli, Kiyoshi Naruse, Ewan Birney, Joachim Wittbrodt
      G3: Genes, Genomes, Genetics March 2014 4: 433-445; https://doi.org/10.1534/g3.113.008722

  6. Drewell, Robert A.

    1. Whole-Genome DNA Methylation Profile of the Jewel Wasp (Nasonia vitripennis)
      Suzannah M. Beeler, Garrett T. Wong, Jennifer M. Zheng, Eliot C. Bush, Emily J. Remnant, Benjamin P. Oldroyd, Robert A. Drewell
      G3: Genes, Genomes, Genetics March 2014 4: 383-388; https://doi.org/10.1534/g3.113.008953

  7. Duncan, Thomas M.

    1. The Yeast Ess1 Prolyl Isomerase Controls Swi6 and Whi5 Nuclear Localization
      David Atencio, Cassandra Barnes, Thomas M. Duncan, Ian M. Willis, Steven D. Hanes
      G3: Genes, Genomes, Genetics March 2014 4: 523-537; https://doi.org/10.1534/g3.113.008763

  8. Dunham, Ian

    1. Genomic and Phenotypic Characterization of a Wild Medaka Population: Towards the Establishment of an Isogenic Population Genetic Resource in Fish
      Mikhail Spivakov, Thomas O. Auer, Ravindra Peravali, Ian Dunham, Dirk Dolle, Asao Fujiyama, Atsushi Toyoda, Tomoyuki Aizu, Yohei Minakuchi, Felix Loosli, Kiyoshi Naruse, Ewan Birney, Joachim Wittbrodt
      G3: Genes, Genomes, Genetics March 2014 4: 433-445; https://doi.org/10.1534/g3.113.008722

  9. Dunham, Maitreya J.

    1. The Dynamics of Diverse Segmental Amplifications in Populations of Saccharomyces cerevisiae Adapting to Strong Selection
      Celia Payen, Sara C. Di Rienzi, Giang T. Ong, Jamie L. Pogachar, Joseph C. Sanchez, Anna B. Sunshine, M. K. Raghuraman, Bonita J. Brewer, Maitreya J. Dunham
      G3: Genes, Genomes, Genetics March 2014 4: 399-409; https://doi.org/10.1534/g3.113.009365

  10. Dwight, Selina S.

    1. The Reference Genome Sequence of Saccharomyces cerevisiae: Then and Now
      Stacia R. Engel, Fred S. Dietrich, Dianna G. Fisk, Gail Binkley, Rama Balakrishnan, Maria C. Costanzo, Selina S. Dwight, Benjamin C. Hitz, Kalpana Karra, Robert S. Nash, Shuai Weng, Edith D. Wong, Paul Lloyd, Marek S. Skrzypek, Stuart R. Miyasato, Matt Simison, J. Michael Cherry
      G3: Genes, Genomes, Genetics March 2014 4: 389-398; https://doi.org/10.1534/g3.113.008995

E

  1. Engel, Stacia R.

    1. The Reference Genome Sequence of Saccharomyces cerevisiae: Then and Now
      Stacia R. Engel, Fred S. Dietrich, Dianna G. Fisk, Gail Binkley, Rama Balakrishnan, Maria C. Costanzo, Selina S. Dwight, Benjamin C. Hitz, Kalpana Karra, Robert S. Nash, Shuai Weng, Edith D. Wong, Paul Lloyd, Marek S. Skrzypek, Stuart R. Miyasato, Matt Simison, J. Michael Cherry
      G3: Genes, Genomes, Genetics March 2014 4: 389-398; https://doi.org/10.1534/g3.113.008995

F

  1. Fisk, Dianna G.

    1. The Reference Genome Sequence of Saccharomyces cerevisiae: Then and Now
      Stacia R. Engel, Fred S. Dietrich, Dianna G. Fisk, Gail Binkley, Rama Balakrishnan, Maria C. Costanzo, Selina S. Dwight, Benjamin C. Hitz, Kalpana Karra, Robert S. Nash, Shuai Weng, Edith D. Wong, Paul Lloyd, Marek S. Skrzypek, Stuart R. Miyasato, Matt Simison, J. Michael Cherry
      G3: Genes, Genomes, Genetics March 2014 4: 389-398; https://doi.org/10.1534/g3.113.008995

  2. Frisch, Matthias

    1. Heteroscedastic Ridge Regression Approaches for Genome-Wide Prediction With a Focus on Computational Efficiency and Accurate Effect Estimation
      Nina Hofheinz, Matthias Frisch
      G3: Genes, Genomes, Genetics March 2014 4: 539-546; https://doi.org/10.1534/g3.113.010025

  3. Fujiyama, Asao

    1. Genomic and Phenotypic Characterization of a Wild Medaka Population: Towards the Establishment of an Isogenic Population Genetic Resource in Fish
      Mikhail Spivakov, Thomas O. Auer, Ravindra Peravali, Ian Dunham, Dirk Dolle, Asao Fujiyama, Atsushi Toyoda, Tomoyuki Aizu, Yohei Minakuchi, Felix Loosli, Kiyoshi Naruse, Ewan Birney, Joachim Wittbrodt
      G3: Genes, Genomes, Genetics March 2014 4: 433-445; https://doi.org/10.1534/g3.113.008722

G

  1. Gaur, Deepika

    1. The BAG Homology Domain of Snl1 Cures Yeast Prion [URE3] Through Regulation of Hsp70 Chaperones
      Navinder Kumar, Deepika Gaur, Daniel C. Masison, Deepak Sharma
      G3: Genes, Genomes, Genetics March 2014 4: 461-470; https://doi.org/10.1534/g3.113.009993

  2. Gostan, Thierry

    1. Metabolic and Environmental Conditions Determine Nuclear Genomic Instability in Budding Yeast Lacking Mitochondrial DNA
      Léon Dirick, Walid Bendris, Vincent Loubiere, Thierry Gostan, Elisabeth Gueydon, Etienne Schwob
      G3: Genes, Genomes, Genetics March 2014 4: 411-423; https://doi.org/10.1534/g3.113.010108

  3. Gueydon, Elisabeth

    1. Metabolic and Environmental Conditions Determine Nuclear Genomic Instability in Budding Yeast Lacking Mitochondrial DNA
      Léon Dirick, Walid Bendris, Vincent Loubiere, Thierry Gostan, Elisabeth Gueydon, Etienne Schwob
      G3: Genes, Genomes, Genetics March 2014 4: 411-423; https://doi.org/10.1534/g3.113.010108

H

  1. Hanes, Steven D.

    1. The Yeast Ess1 Prolyl Isomerase Controls Swi6 and Whi5 Nuclear Localization
      David Atencio, Cassandra Barnes, Thomas M. Duncan, Ian M. Willis, Steven D. Hanes
      G3: Genes, Genomes, Genetics March 2014 4: 523-537; https://doi.org/10.1534/g3.113.008763

  2. Hitz, Benjamin C.

    1. The Reference Genome Sequence of Saccharomyces cerevisiae: Then and Now
      Stacia R. Engel, Fred S. Dietrich, Dianna G. Fisk, Gail Binkley, Rama Balakrishnan, Maria C. Costanzo, Selina S. Dwight, Benjamin C. Hitz, Kalpana Karra, Robert S. Nash, Shuai Weng, Edith D. Wong, Paul Lloyd, Marek S. Skrzypek, Stuart R. Miyasato, Matt Simison, J. Michael Cherry
      G3: Genes, Genomes, Genetics March 2014 4: 389-398; https://doi.org/10.1534/g3.113.008995

  3. Hofheinz, Nina

    1. Heteroscedastic Ridge Regression Approaches for Genome-Wide Prediction With a Focus on Computational Efficiency and Accurate Effect Estimation
      Nina Hofheinz, Matthias Frisch
      G3: Genes, Genomes, Genetics March 2014 4: 539-546; https://doi.org/10.1534/g3.113.010025

  4. Hollien, Julie

    1. In Vivo Determination of Direct Targets of the Nonsense-Mediated Decay Pathway in Drosophila
      Alex Chapin, Hao Hu, Shawn G. Rynearson, Julie Hollien, Mark Yandell, Mark M. Metzstein
      G3: Genes, Genomes, Genetics March 2014 4: 485-496; https://doi.org/10.1534/g3.113.009357

  5. Hu, Hao

    1. In Vivo Determination of Direct Targets of the Nonsense-Mediated Decay Pathway in Drosophila
      Alex Chapin, Hao Hu, Shawn G. Rynearson, Julie Hollien, Mark Yandell, Mark M. Metzstein
      G3: Genes, Genomes, Genetics March 2014 4: 485-496; https://doi.org/10.1534/g3.113.009357

K

  1. Karra, Kalpana

    1. The Reference Genome Sequence of Saccharomyces cerevisiae: Then and Now
      Stacia R. Engel, Fred S. Dietrich, Dianna G. Fisk, Gail Binkley, Rama Balakrishnan, Maria C. Costanzo, Selina S. Dwight, Benjamin C. Hitz, Kalpana Karra, Robert S. Nash, Shuai Weng, Edith D. Wong, Paul Lloyd, Marek S. Skrzypek, Stuart R. Miyasato, Matt Simison, J. Michael Cherry
      G3: Genes, Genomes, Genetics March 2014 4: 389-398; https://doi.org/10.1534/g3.113.008995

  2. Kumar, Navinder

    1. The BAG Homology Domain of Snl1 Cures Yeast Prion [URE3] Through Regulation of Hsp70 Chaperones
      Navinder Kumar, Deepika Gaur, Daniel C. Masison, Deepak Sharma
      G3: Genes, Genomes, Genetics March 2014 4: 461-470; https://doi.org/10.1534/g3.113.009993

L

  1. LaRocque, Jeannine R.

    1. Double-Strand Break Repair Assays Determine Pathway Choice and Structure of Gene Conversion Events in Drosophila melanogaster
      Anthony T. Do, Joseph T. Brooks, Margot K. Le Neveu, Jeannine R. LaRocque
      G3: Genes, Genomes, Genetics March 2014 4: 425-432; https://doi.org/10.1534/g3.113.010074

  2. Large, Edward E.

    1. Caenorhabditis elegans SWI/SNF Subunits Control Sequential Developmental Stages in the Somatic Gonad
      Edward E. Large, Laura D. Mathies
      G3: Genes, Genomes, Genetics March 2014 4: 471-483; https://doi.org/10.1534/g3.113.009852

  3. Le Neveu, Margot K.

    1. Double-Strand Break Repair Assays Determine Pathway Choice and Structure of Gene Conversion Events in Drosophila melanogaster
      Anthony T. Do, Joseph T. Brooks, Margot K. Le Neveu, Jeannine R. LaRocque
      G3: Genes, Genomes, Genetics March 2014 4: 425-432; https://doi.org/10.1534/g3.113.010074

  4. Lloyd, Paul

    1. The Reference Genome Sequence of Saccharomyces cerevisiae: Then and Now
      Stacia R. Engel, Fred S. Dietrich, Dianna G. Fisk, Gail Binkley, Rama Balakrishnan, Maria C. Costanzo, Selina S. Dwight, Benjamin C. Hitz, Kalpana Karra, Robert S. Nash, Shuai Weng, Edith D. Wong, Paul Lloyd, Marek S. Skrzypek, Stuart R. Miyasato, Matt Simison, J. Michael Cherry
      G3: Genes, Genomes, Genetics March 2014 4: 389-398; https://doi.org/10.1534/g3.113.008995

  5. Loosli, Felix

    1. Genomic and Phenotypic Characterization of a Wild Medaka Population: Towards the Establishment of an Isogenic Population Genetic Resource in Fish
      Mikhail Spivakov, Thomas O. Auer, Ravindra Peravali, Ian Dunham, Dirk Dolle, Asao Fujiyama, Atsushi Toyoda, Tomoyuki Aizu, Yohei Minakuchi, Felix Loosli, Kiyoshi Naruse, Ewan Birney, Joachim Wittbrodt
      G3: Genes, Genomes, Genetics March 2014 4: 433-445; https://doi.org/10.1534/g3.113.008722

  6. Loubiere, Vincent

    1. Metabolic and Environmental Conditions Determine Nuclear Genomic Instability in Budding Yeast Lacking Mitochondrial DNA
      Léon Dirick, Walid Bendris, Vincent Loubiere, Thierry Gostan, Elisabeth Gueydon, Etienne Schwob
      G3: Genes, Genomes, Genetics March 2014 4: 411-423; https://doi.org/10.1534/g3.113.010108

M

  1. Maggert, Keith A.

    1. Reduced rDNA Copy Number Does Not Affect “Competitive” Chromosome Pairing in XYY Males of Drosophila melanogaster
      Keith A. Maggert
      G3: Genes, Genomes, Genetics March 2014 4: 497-507; https://doi.org/10.1534/g3.113.008730

  2. Masison, Daniel C.

    1. The BAG Homology Domain of Snl1 Cures Yeast Prion [URE3] Through Regulation of Hsp70 Chaperones
      Navinder Kumar, Deepika Gaur, Daniel C. Masison, Deepak Sharma
      G3: Genes, Genomes, Genetics March 2014 4: 461-470; https://doi.org/10.1534/g3.113.009993

  3. Mathies, Laura D.

    1. Caenorhabditis elegans SWI/SNF Subunits Control Sequential Developmental Stages in the Somatic Gonad
      Edward E. Large, Laura D. Mathies
      G3: Genes, Genomes, Genetics March 2014 4: 471-483; https://doi.org/10.1534/g3.113.009852

  4. Metzstein, Mark M.

    1. In Vivo Determination of Direct Targets of the Nonsense-Mediated Decay Pathway in Drosophila
      Alex Chapin, Hao Hu, Shawn G. Rynearson, Julie Hollien, Mark Yandell, Mark M. Metzstein
      G3: Genes, Genomes, Genetics March 2014 4: 485-496; https://doi.org/10.1534/g3.113.009357

  5. Minakuchi, Yohei

    1. Genomic and Phenotypic Characterization of a Wild Medaka Population: Towards the Establishment of an Isogenic Population Genetic Resource in Fish
      Mikhail Spivakov, Thomas O. Auer, Ravindra Peravali, Ian Dunham, Dirk Dolle, Asao Fujiyama, Atsushi Toyoda, Tomoyuki Aizu, Yohei Minakuchi, Felix Loosli, Kiyoshi Naruse, Ewan Birney, Joachim Wittbrodt
      G3: Genes, Genomes, Genetics March 2014 4: 433-445; https://doi.org/10.1534/g3.113.008722

  6. Miyasato, Stuart R.

    1. The Reference Genome Sequence of Saccharomyces cerevisiae: Then and Now
      Stacia R. Engel, Fred S. Dietrich, Dianna G. Fisk, Gail Binkley, Rama Balakrishnan, Maria C. Costanzo, Selina S. Dwight, Benjamin C. Hitz, Kalpana Karra, Robert S. Nash, Shuai Weng, Edith D. Wong, Paul Lloyd, Marek S. Skrzypek, Stuart R. Miyasato, Matt Simison, J. Michael Cherry
      G3: Genes, Genomes, Genetics March 2014 4: 389-398; https://doi.org/10.1534/g3.113.008995

  7. Modliszewski, Jennifer L.

    1. Near-Absent Levels of Segregational Variation Suggest Limited Opportunities for the Introduction of Genetic Variation Via Homeologous Chromosome Pairing in Synthetic Neoallotetraploid Mimulus
      Jennifer L. Modliszewski, John H. Willis
      G3: Genes, Genomes, Genetics March 2014 4: 509-522; https://doi.org/10.1534/g3.113.008441

N

  1. Naish, Kerry A.

    1. A Dense Linkage Map for Chinook salmon (Oncorhynchus tshawytscha) Reveals Variable Chromosomal Divergence After an Ancestral Whole Genome Duplication Event
      Marine S. O. Brieuc, Charles D. Waters, James E. Seeb, Kerry A. Naish
      G3: Genes, Genomes, Genetics March 2014 4: 447-460; https://doi.org/10.1534/g3.113.009316

  2. Naruse, Kiyoshi

    1. Genomic and Phenotypic Characterization of a Wild Medaka Population: Towards the Establishment of an Isogenic Population Genetic Resource in Fish
      Mikhail Spivakov, Thomas O. Auer, Ravindra Peravali, Ian Dunham, Dirk Dolle, Asao Fujiyama, Atsushi Toyoda, Tomoyuki Aizu, Yohei Minakuchi, Felix Loosli, Kiyoshi Naruse, Ewan Birney, Joachim Wittbrodt
      G3: Genes, Genomes, Genetics March 2014 4: 433-445; https://doi.org/10.1534/g3.113.008722

  3. Nash, Robert S.

    1. The Reference Genome Sequence of Saccharomyces cerevisiae: Then and Now
      Stacia R. Engel, Fred S. Dietrich, Dianna G. Fisk, Gail Binkley, Rama Balakrishnan, Maria C. Costanzo, Selina S. Dwight, Benjamin C. Hitz, Kalpana Karra, Robert S. Nash, Shuai Weng, Edith D. Wong, Paul Lloyd, Marek S. Skrzypek, Stuart R. Miyasato, Matt Simison, J. Michael Cherry
      G3: Genes, Genomes, Genetics March 2014 4: 389-398; https://doi.org/10.1534/g3.113.008995

O

  1. Oldroyd, Benjamin P.

    1. Whole-Genome DNA Methylation Profile of the Jewel Wasp (Nasonia vitripennis)
      Suzannah M. Beeler, Garrett T. Wong, Jennifer M. Zheng, Eliot C. Bush, Emily J. Remnant, Benjamin P. Oldroyd, Robert A. Drewell
      G3: Genes, Genomes, Genetics March 2014 4: 383-388; https://doi.org/10.1534/g3.113.008953

  2. Ong, Giang T.

    1. The Dynamics of Diverse Segmental Amplifications in Populations of Saccharomyces cerevisiae Adapting to Strong Selection
      Celia Payen, Sara C. Di Rienzi, Giang T. Ong, Jamie L. Pogachar, Joseph C. Sanchez, Anna B. Sunshine, M. K. Raghuraman, Bonita J. Brewer, Maitreya J. Dunham
      G3: Genes, Genomes, Genetics March 2014 4: 399-409; https://doi.org/10.1534/g3.113.009365

P

  1. Parts, Leopold

    1. gitter: A Robust and Accurate Method for Quantification of Colony Sizes From Plate Images
      Omar Wagih, Leopold Parts
      G3: Genes, Genomes, Genetics March 2014 4: 547-552; https://doi.org/10.1534/g3.113.009431

  2. Payen, Celia

    1. The Dynamics of Diverse Segmental Amplifications in Populations of Saccharomyces cerevisiae Adapting to Strong Selection
      Celia Payen, Sara C. Di Rienzi, Giang T. Ong, Jamie L. Pogachar, Joseph C. Sanchez, Anna B. Sunshine, M. K. Raghuraman, Bonita J. Brewer, Maitreya J. Dunham
      G3: Genes, Genomes, Genetics March 2014 4: 399-409; https://doi.org/10.1534/g3.113.009365

  3. Peravali, Ravindra

    1. Genomic and Phenotypic Characterization of a Wild Medaka Population: Towards the Establishment of an Isogenic Population Genetic Resource in Fish
      Mikhail Spivakov, Thomas O. Auer, Ravindra Peravali, Ian Dunham, Dirk Dolle, Asao Fujiyama, Atsushi Toyoda, Tomoyuki Aizu, Yohei Minakuchi, Felix Loosli, Kiyoshi Naruse, Ewan Birney, Joachim Wittbrodt
      G3: Genes, Genomes, Genetics March 2014 4: 433-445; https://doi.org/10.1534/g3.113.008722

  4. Pogachar, Jamie L.

    1. The Dynamics of Diverse Segmental Amplifications in Populations of Saccharomyces cerevisiae Adapting to Strong Selection
      Celia Payen, Sara C. Di Rienzi, Giang T. Ong, Jamie L. Pogachar, Joseph C. Sanchez, Anna B. Sunshine, M. K. Raghuraman, Bonita J. Brewer, Maitreya J. Dunham
      G3: Genes, Genomes, Genetics March 2014 4: 399-409; https://doi.org/10.1534/g3.113.009365

R

  1. Raghuraman, M. K.

    1. The Dynamics of Diverse Segmental Amplifications in Populations of Saccharomyces cerevisiae Adapting to Strong Selection
      Celia Payen, Sara C. Di Rienzi, Giang T. Ong, Jamie L. Pogachar, Joseph C. Sanchez, Anna B. Sunshine, M. K. Raghuraman, Bonita J. Brewer, Maitreya J. Dunham
      G3: Genes, Genomes, Genetics March 2014 4: 399-409; https://doi.org/10.1534/g3.113.009365

  2. Remnant, Emily J.

    1. Whole-Genome DNA Methylation Profile of the Jewel Wasp (Nasonia vitripennis)
      Suzannah M. Beeler, Garrett T. Wong, Jennifer M. Zheng, Eliot C. Bush, Emily J. Remnant, Benjamin P. Oldroyd, Robert A. Drewell
      G3: Genes, Genomes, Genetics March 2014 4: 383-388; https://doi.org/10.1534/g3.113.008953

  3. Rynearson, Shawn G.

    1. In Vivo Determination of Direct Targets of the Nonsense-Mediated Decay Pathway in Drosophila
      Alex Chapin, Hao Hu, Shawn G. Rynearson, Julie Hollien, Mark Yandell, Mark M. Metzstein
      G3: Genes, Genomes, Genetics March 2014 4: 485-496; https://doi.org/10.1534/g3.113.009357

S

  1. Sanchez, Joseph C.

    1. The Dynamics of Diverse Segmental Amplifications in Populations of Saccharomyces cerevisiae Adapting to Strong Selection
      Celia Payen, Sara C. Di Rienzi, Giang T. Ong, Jamie L. Pogachar, Joseph C. Sanchez, Anna B. Sunshine, M. K. Raghuraman, Bonita J. Brewer, Maitreya J. Dunham
      G3: Genes, Genomes, Genetics March 2014 4: 399-409; https://doi.org/10.1534/g3.113.009365

  2. Schwob, Etienne

    1. Metabolic and Environmental Conditions Determine Nuclear Genomic Instability in Budding Yeast Lacking Mitochondrial DNA
      Léon Dirick, Walid Bendris, Vincent Loubiere, Thierry Gostan, Elisabeth Gueydon, Etienne Schwob
      G3: Genes, Genomes, Genetics March 2014 4: 411-423; https://doi.org/10.1534/g3.113.010108

  3. Seeb, James E.

    1. A Dense Linkage Map for Chinook salmon (Oncorhynchus tshawytscha) Reveals Variable Chromosomal Divergence After an Ancestral Whole Genome Duplication Event
      Marine S. O. Brieuc, Charles D. Waters, James E. Seeb, Kerry A. Naish
      G3: Genes, Genomes, Genetics March 2014 4: 447-460; https://doi.org/10.1534/g3.113.009316

  4. Sharma, Deepak

    1. The BAG Homology Domain of Snl1 Cures Yeast Prion [URE3] Through Regulation of Hsp70 Chaperones
      Navinder Kumar, Deepika Gaur, Daniel C. Masison, Deepak Sharma
      G3: Genes, Genomes, Genetics March 2014 4: 461-470; https://doi.org/10.1534/g3.113.009993

  5. Simison, Matt

    1. The Reference Genome Sequence of Saccharomyces cerevisiae: Then and Now
      Stacia R. Engel, Fred S. Dietrich, Dianna G. Fisk, Gail Binkley, Rama Balakrishnan, Maria C. Costanzo, Selina S. Dwight, Benjamin C. Hitz, Kalpana Karra, Robert S. Nash, Shuai Weng, Edith D. Wong, Paul Lloyd, Marek S. Skrzypek, Stuart R. Miyasato, Matt Simison, J. Michael Cherry
      G3: Genes, Genomes, Genetics March 2014 4: 389-398; https://doi.org/10.1534/g3.113.008995

  6. Skrzypek, Marek S.

    1. The Reference Genome Sequence of Saccharomyces cerevisiae: Then and Now
      Stacia R. Engel, Fred S. Dietrich, Dianna G. Fisk, Gail Binkley, Rama Balakrishnan, Maria C. Costanzo, Selina S. Dwight, Benjamin C. Hitz, Kalpana Karra, Robert S. Nash, Shuai Weng, Edith D. Wong, Paul Lloyd, Marek S. Skrzypek, Stuart R. Miyasato, Matt Simison, J. Michael Cherry
      G3: Genes, Genomes, Genetics March 2014 4: 389-398; https://doi.org/10.1534/g3.113.008995

  7. Spivakov, Mikhail

    1. Genomic and Phenotypic Characterization of a Wild Medaka Population: Towards the Establishment of an Isogenic Population Genetic Resource in Fish
      Mikhail Spivakov, Thomas O. Auer, Ravindra Peravali, Ian Dunham, Dirk Dolle, Asao Fujiyama, Atsushi Toyoda, Tomoyuki Aizu, Yohei Minakuchi, Felix Loosli, Kiyoshi Naruse, Ewan Birney, Joachim Wittbrodt
      G3: Genes, Genomes, Genetics March 2014 4: 433-445; https://doi.org/10.1534/g3.113.008722

  8. Sunshine, Anna B.

    1. The Dynamics of Diverse Segmental Amplifications in Populations of Saccharomyces cerevisiae Adapting to Strong Selection
      Celia Payen, Sara C. Di Rienzi, Giang T. Ong, Jamie L. Pogachar, Joseph C. Sanchez, Anna B. Sunshine, M. K. Raghuraman, Bonita J. Brewer, Maitreya J. Dunham
      G3: Genes, Genomes, Genetics March 2014 4: 399-409; https://doi.org/10.1534/g3.113.009365

T

  1. Toyoda, Atsushi

    1. Genomic and Phenotypic Characterization of a Wild Medaka Population: Towards the Establishment of an Isogenic Population Genetic Resource in Fish
      Mikhail Spivakov, Thomas O. Auer, Ravindra Peravali, Ian Dunham, Dirk Dolle, Asao Fujiyama, Atsushi Toyoda, Tomoyuki Aizu, Yohei Minakuchi, Felix Loosli, Kiyoshi Naruse, Ewan Birney, Joachim Wittbrodt
      G3: Genes, Genomes, Genetics March 2014 4: 433-445; https://doi.org/10.1534/g3.113.008722

W

  1. Wagih, Omar

    1. gitter: A Robust and Accurate Method for Quantification of Colony Sizes From Plate Images
      Omar Wagih, Leopold Parts
      G3: Genes, Genomes, Genetics March 2014 4: 547-552; https://doi.org/10.1534/g3.113.009431

  2. Waters, Charles D.

    1. A Dense Linkage Map for Chinook salmon (Oncorhynchus tshawytscha) Reveals Variable Chromosomal Divergence After an Ancestral Whole Genome Duplication Event
      Marine S. O. Brieuc, Charles D. Waters, James E. Seeb, Kerry A. Naish
      G3: Genes, Genomes, Genetics March 2014 4: 447-460; https://doi.org/10.1534/g3.113.009316

  3. Weng, Shuai

    1. The Reference Genome Sequence of Saccharomyces cerevisiae: Then and Now
      Stacia R. Engel, Fred S. Dietrich, Dianna G. Fisk, Gail Binkley, Rama Balakrishnan, Maria C. Costanzo, Selina S. Dwight, Benjamin C. Hitz, Kalpana Karra, Robert S. Nash, Shuai Weng, Edith D. Wong, Paul Lloyd, Marek S. Skrzypek, Stuart R. Miyasato, Matt Simison, J. Michael Cherry
      G3: Genes, Genomes, Genetics March 2014 4: 389-398; https://doi.org/10.1534/g3.113.008995

  4. Willis, Ian M.

    1. The Yeast Ess1 Prolyl Isomerase Controls Swi6 and Whi5 Nuclear Localization
      David Atencio, Cassandra Barnes, Thomas M. Duncan, Ian M. Willis, Steven D. Hanes
      G3: Genes, Genomes, Genetics March 2014 4: 523-537; https://doi.org/10.1534/g3.113.008763

  5. Willis, John H.

    1. Near-Absent Levels of Segregational Variation Suggest Limited Opportunities for the Introduction of Genetic Variation Via Homeologous Chromosome Pairing in Synthetic Neoallotetraploid Mimulus
      Jennifer L. Modliszewski, John H. Willis
      G3: Genes, Genomes, Genetics March 2014 4: 509-522; https://doi.org/10.1534/g3.113.008441

  6. Wittbrodt, Joachim

    1. Genomic and Phenotypic Characterization of a Wild Medaka Population: Towards the Establishment of an Isogenic Population Genetic Resource in Fish
      Mikhail Spivakov, Thomas O. Auer, Ravindra Peravali, Ian Dunham, Dirk Dolle, Asao Fujiyama, Atsushi Toyoda, Tomoyuki Aizu, Yohei Minakuchi, Felix Loosli, Kiyoshi Naruse, Ewan Birney, Joachim Wittbrodt
      G3: Genes, Genomes, Genetics March 2014 4: 433-445; https://doi.org/10.1534/g3.113.008722

  7. Wong, Edith D.

    1. The Reference Genome Sequence of Saccharomyces cerevisiae: Then and Now
      Stacia R. Engel, Fred S. Dietrich, Dianna G. Fisk, Gail Binkley, Rama Balakrishnan, Maria C. Costanzo, Selina S. Dwight, Benjamin C. Hitz, Kalpana Karra, Robert S. Nash, Shuai Weng, Edith D. Wong, Paul Lloyd, Marek S. Skrzypek, Stuart R. Miyasato, Matt Simison, J. Michael Cherry
      G3: Genes, Genomes, Genetics March 2014 4: 389-398; https://doi.org/10.1534/g3.113.008995

  8. Wong, Garrett T.

    1. Whole-Genome DNA Methylation Profile of the Jewel Wasp (Nasonia vitripennis)
      Suzannah M. Beeler, Garrett T. Wong, Jennifer M. Zheng, Eliot C. Bush, Emily J. Remnant, Benjamin P. Oldroyd, Robert A. Drewell
      G3: Genes, Genomes, Genetics March 2014 4: 383-388; https://doi.org/10.1534/g3.113.008953

Y

  1. Yandell, Mark

    1. In Vivo Determination of Direct Targets of the Nonsense-Mediated Decay Pathway in Drosophila
      Alex Chapin, Hao Hu, Shawn G. Rynearson, Julie Hollien, Mark Yandell, Mark M. Metzstein
      G3: Genes, Genomes, Genetics March 2014 4: 485-496; https://doi.org/10.1534/g3.113.009357

Z

  1. Zheng, Jennifer M.

    1. Whole-Genome DNA Methylation Profile of the Jewel Wasp (Nasonia vitripennis)
      Suzannah M. Beeler, Garrett T. Wong, Jennifer M. Zheng, Eliot C. Bush, Emily J. Remnant, Benjamin P. Oldroyd, Robert A. Drewell
      G3: Genes, Genomes, Genetics March 2014 4: 383-388; https://doi.org/10.1534/g3.113.008953
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PUBLICATION INFORMATION

Volume 4 Issue 3, March 2014

G3: Genes|Genomes|Genetics: 4 (3)