March 2014 Table of Contents
A
Aizu, Tomoyuki
- Genomic and Phenotypic Characterization of a Wild Medaka Population: Towards the Establishment of an Isogenic Population Genetic Resource in FishMikhail Spivakov, Thomas O. Auer, Ravindra Peravali, Ian Dunham, Dirk Dolle, Asao Fujiyama, Atsushi Toyoda, Tomoyuki Aizu, Yohei Minakuchi, Felix Loosli, Kiyoshi Naruse, Ewan Birney, Joachim WittbrodtG3: Genes, Genomes, Genetics March 2014 4: 433-445; https://doi.org/10.1534/g3.113.008722
Atencio, David
- The Yeast Ess1 Prolyl Isomerase Controls Swi6 and Whi5 Nuclear LocalizationDavid Atencio, Cassandra Barnes, Thomas M. Duncan, Ian M. Willis, Steven D. HanesG3: Genes, Genomes, Genetics March 2014 4: 523-537; https://doi.org/10.1534/g3.113.008763
Auer, Thomas O.
- Genomic and Phenotypic Characterization of a Wild Medaka Population: Towards the Establishment of an Isogenic Population Genetic Resource in FishMikhail Spivakov, Thomas O. Auer, Ravindra Peravali, Ian Dunham, Dirk Dolle, Asao Fujiyama, Atsushi Toyoda, Tomoyuki Aizu, Yohei Minakuchi, Felix Loosli, Kiyoshi Naruse, Ewan Birney, Joachim WittbrodtG3: Genes, Genomes, Genetics March 2014 4: 433-445; https://doi.org/10.1534/g3.113.008722
B
Balakrishnan, Rama
- The Reference Genome Sequence of Saccharomyces cerevisiae: Then and NowStacia R. Engel, Fred S. Dietrich, Dianna G. Fisk, Gail Binkley, Rama Balakrishnan, Maria C. Costanzo, Selina S. Dwight, Benjamin C. Hitz, Kalpana Karra, Robert S. Nash, Shuai Weng, Edith D. Wong, Paul Lloyd, Marek S. Skrzypek, Stuart R. Miyasato, Matt Simison, J. Michael CherryG3: Genes, Genomes, Genetics March 2014 4: 389-398; https://doi.org/10.1534/g3.113.008995
Barnes, Cassandra
- The Yeast Ess1 Prolyl Isomerase Controls Swi6 and Whi5 Nuclear LocalizationDavid Atencio, Cassandra Barnes, Thomas M. Duncan, Ian M. Willis, Steven D. HanesG3: Genes, Genomes, Genetics March 2014 4: 523-537; https://doi.org/10.1534/g3.113.008763
Beeler, Suzannah M.
- Whole-Genome DNA Methylation Profile of the Jewel Wasp (Nasonia vitripennis)Suzannah M. Beeler, Garrett T. Wong, Jennifer M. Zheng, Eliot C. Bush, Emily J. Remnant, Benjamin P. Oldroyd, Robert A. DrewellG3: Genes, Genomes, Genetics March 2014 4: 383-388; https://doi.org/10.1534/g3.113.008953
Bendris, Walid
- Metabolic and Environmental Conditions Determine Nuclear Genomic Instability in Budding Yeast Lacking Mitochondrial DNALéon Dirick, Walid Bendris, Vincent Loubiere, Thierry Gostan, Elisabeth Gueydon, Etienne SchwobG3: Genes, Genomes, Genetics March 2014 4: 411-423; https://doi.org/10.1534/g3.113.010108
Binkley, Gail
- The Reference Genome Sequence of Saccharomyces cerevisiae: Then and NowStacia R. Engel, Fred S. Dietrich, Dianna G. Fisk, Gail Binkley, Rama Balakrishnan, Maria C. Costanzo, Selina S. Dwight, Benjamin C. Hitz, Kalpana Karra, Robert S. Nash, Shuai Weng, Edith D. Wong, Paul Lloyd, Marek S. Skrzypek, Stuart R. Miyasato, Matt Simison, J. Michael CherryG3: Genes, Genomes, Genetics March 2014 4: 389-398; https://doi.org/10.1534/g3.113.008995
Birney, Ewan
- Genomic and Phenotypic Characterization of a Wild Medaka Population: Towards the Establishment of an Isogenic Population Genetic Resource in FishMikhail Spivakov, Thomas O. Auer, Ravindra Peravali, Ian Dunham, Dirk Dolle, Asao Fujiyama, Atsushi Toyoda, Tomoyuki Aizu, Yohei Minakuchi, Felix Loosli, Kiyoshi Naruse, Ewan Birney, Joachim WittbrodtG3: Genes, Genomes, Genetics March 2014 4: 433-445; https://doi.org/10.1534/g3.113.008722
Brewer, Bonita J.
- The Dynamics of Diverse Segmental Amplifications in Populations of Saccharomyces cerevisiae Adapting to Strong SelectionCelia Payen, Sara C. Di Rienzi, Giang T. Ong, Jamie L. Pogachar, Joseph C. Sanchez, Anna B. Sunshine, M. K. Raghuraman, Bonita J. Brewer, Maitreya J. DunhamG3: Genes, Genomes, Genetics March 2014 4: 399-409; https://doi.org/10.1534/g3.113.009365
Brieuc, Marine S. O.
- A Dense Linkage Map for Chinook salmon (Oncorhynchus tshawytscha) Reveals Variable Chromosomal Divergence After an Ancestral Whole Genome Duplication EventMarine S. O. Brieuc, Charles D. Waters, James E. Seeb, Kerry A. NaishG3: Genes, Genomes, Genetics March 2014 4: 447-460; https://doi.org/10.1534/g3.113.009316
Brooks, Joseph T.
- Double-Strand Break Repair Assays Determine Pathway Choice and Structure of Gene Conversion Events in Drosophila melanogasterAnthony T. Do, Joseph T. Brooks, Margot K. Le Neveu, Jeannine R. LaRocqueG3: Genes, Genomes, Genetics March 2014 4: 425-432; https://doi.org/10.1534/g3.113.010074
Bush, Eliot C.
- Whole-Genome DNA Methylation Profile of the Jewel Wasp (Nasonia vitripennis)Suzannah M. Beeler, Garrett T. Wong, Jennifer M. Zheng, Eliot C. Bush, Emily J. Remnant, Benjamin P. Oldroyd, Robert A. DrewellG3: Genes, Genomes, Genetics March 2014 4: 383-388; https://doi.org/10.1534/g3.113.008953
C
Chapin, Alex
- In Vivo Determination of Direct Targets of the Nonsense-Mediated Decay Pathway in DrosophilaAlex Chapin, Hao Hu, Shawn G. Rynearson, Julie Hollien, Mark Yandell, Mark M. MetzsteinG3: Genes, Genomes, Genetics March 2014 4: 485-496; https://doi.org/10.1534/g3.113.009357
Cherry, J. Michael
- The Reference Genome Sequence of Saccharomyces cerevisiae: Then and NowStacia R. Engel, Fred S. Dietrich, Dianna G. Fisk, Gail Binkley, Rama Balakrishnan, Maria C. Costanzo, Selina S. Dwight, Benjamin C. Hitz, Kalpana Karra, Robert S. Nash, Shuai Weng, Edith D. Wong, Paul Lloyd, Marek S. Skrzypek, Stuart R. Miyasato, Matt Simison, J. Michael CherryG3: Genes, Genomes, Genetics March 2014 4: 389-398; https://doi.org/10.1534/g3.113.008995
Costanzo, Maria C.
- The Reference Genome Sequence of Saccharomyces cerevisiae: Then and NowStacia R. Engel, Fred S. Dietrich, Dianna G. Fisk, Gail Binkley, Rama Balakrishnan, Maria C. Costanzo, Selina S. Dwight, Benjamin C. Hitz, Kalpana Karra, Robert S. Nash, Shuai Weng, Edith D. Wong, Paul Lloyd, Marek S. Skrzypek, Stuart R. Miyasato, Matt Simison, J. Michael CherryG3: Genes, Genomes, Genetics March 2014 4: 389-398; https://doi.org/10.1534/g3.113.008995
D
Di Rienzi, Sara C.
- The Dynamics of Diverse Segmental Amplifications in Populations of Saccharomyces cerevisiae Adapting to Strong SelectionCelia Payen, Sara C. Di Rienzi, Giang T. Ong, Jamie L. Pogachar, Joseph C. Sanchez, Anna B. Sunshine, M. K. Raghuraman, Bonita J. Brewer, Maitreya J. DunhamG3: Genes, Genomes, Genetics March 2014 4: 399-409; https://doi.org/10.1534/g3.113.009365
Dietrich, Fred S.
- The Reference Genome Sequence of Saccharomyces cerevisiae: Then and NowStacia R. Engel, Fred S. Dietrich, Dianna G. Fisk, Gail Binkley, Rama Balakrishnan, Maria C. Costanzo, Selina S. Dwight, Benjamin C. Hitz, Kalpana Karra, Robert S. Nash, Shuai Weng, Edith D. Wong, Paul Lloyd, Marek S. Skrzypek, Stuart R. Miyasato, Matt Simison, J. Michael CherryG3: Genes, Genomes, Genetics March 2014 4: 389-398; https://doi.org/10.1534/g3.113.008995
Dirick, Léon
- Metabolic and Environmental Conditions Determine Nuclear Genomic Instability in Budding Yeast Lacking Mitochondrial DNALéon Dirick, Walid Bendris, Vincent Loubiere, Thierry Gostan, Elisabeth Gueydon, Etienne SchwobG3: Genes, Genomes, Genetics March 2014 4: 411-423; https://doi.org/10.1534/g3.113.010108
Do, Anthony T.
- Double-Strand Break Repair Assays Determine Pathway Choice and Structure of Gene Conversion Events in Drosophila melanogasterAnthony T. Do, Joseph T. Brooks, Margot K. Le Neveu, Jeannine R. LaRocqueG3: Genes, Genomes, Genetics March 2014 4: 425-432; https://doi.org/10.1534/g3.113.010074
Dolle, Dirk
- Genomic and Phenotypic Characterization of a Wild Medaka Population: Towards the Establishment of an Isogenic Population Genetic Resource in FishMikhail Spivakov, Thomas O. Auer, Ravindra Peravali, Ian Dunham, Dirk Dolle, Asao Fujiyama, Atsushi Toyoda, Tomoyuki Aizu, Yohei Minakuchi, Felix Loosli, Kiyoshi Naruse, Ewan Birney, Joachim WittbrodtG3: Genes, Genomes, Genetics March 2014 4: 433-445; https://doi.org/10.1534/g3.113.008722
Drewell, Robert A.
- Whole-Genome DNA Methylation Profile of the Jewel Wasp (Nasonia vitripennis)Suzannah M. Beeler, Garrett T. Wong, Jennifer M. Zheng, Eliot C. Bush, Emily J. Remnant, Benjamin P. Oldroyd, Robert A. DrewellG3: Genes, Genomes, Genetics March 2014 4: 383-388; https://doi.org/10.1534/g3.113.008953
Duncan, Thomas M.
- The Yeast Ess1 Prolyl Isomerase Controls Swi6 and Whi5 Nuclear LocalizationDavid Atencio, Cassandra Barnes, Thomas M. Duncan, Ian M. Willis, Steven D. HanesG3: Genes, Genomes, Genetics March 2014 4: 523-537; https://doi.org/10.1534/g3.113.008763
Dunham, Ian
- Genomic and Phenotypic Characterization of a Wild Medaka Population: Towards the Establishment of an Isogenic Population Genetic Resource in FishMikhail Spivakov, Thomas O. Auer, Ravindra Peravali, Ian Dunham, Dirk Dolle, Asao Fujiyama, Atsushi Toyoda, Tomoyuki Aizu, Yohei Minakuchi, Felix Loosli, Kiyoshi Naruse, Ewan Birney, Joachim WittbrodtG3: Genes, Genomes, Genetics March 2014 4: 433-445; https://doi.org/10.1534/g3.113.008722
Dunham, Maitreya J.
- The Dynamics of Diverse Segmental Amplifications in Populations of Saccharomyces cerevisiae Adapting to Strong SelectionCelia Payen, Sara C. Di Rienzi, Giang T. Ong, Jamie L. Pogachar, Joseph C. Sanchez, Anna B. Sunshine, M. K. Raghuraman, Bonita J. Brewer, Maitreya J. DunhamG3: Genes, Genomes, Genetics March 2014 4: 399-409; https://doi.org/10.1534/g3.113.009365
Dwight, Selina S.
- The Reference Genome Sequence of Saccharomyces cerevisiae: Then and NowStacia R. Engel, Fred S. Dietrich, Dianna G. Fisk, Gail Binkley, Rama Balakrishnan, Maria C. Costanzo, Selina S. Dwight, Benjamin C. Hitz, Kalpana Karra, Robert S. Nash, Shuai Weng, Edith D. Wong, Paul Lloyd, Marek S. Skrzypek, Stuart R. Miyasato, Matt Simison, J. Michael CherryG3: Genes, Genomes, Genetics March 2014 4: 389-398; https://doi.org/10.1534/g3.113.008995
E
Engel, Stacia R.
- The Reference Genome Sequence of Saccharomyces cerevisiae: Then and NowStacia R. Engel, Fred S. Dietrich, Dianna G. Fisk, Gail Binkley, Rama Balakrishnan, Maria C. Costanzo, Selina S. Dwight, Benjamin C. Hitz, Kalpana Karra, Robert S. Nash, Shuai Weng, Edith D. Wong, Paul Lloyd, Marek S. Skrzypek, Stuart R. Miyasato, Matt Simison, J. Michael CherryG3: Genes, Genomes, Genetics March 2014 4: 389-398; https://doi.org/10.1534/g3.113.008995
F
Fisk, Dianna G.
- The Reference Genome Sequence of Saccharomyces cerevisiae: Then and NowStacia R. Engel, Fred S. Dietrich, Dianna G. Fisk, Gail Binkley, Rama Balakrishnan, Maria C. Costanzo, Selina S. Dwight, Benjamin C. Hitz, Kalpana Karra, Robert S. Nash, Shuai Weng, Edith D. Wong, Paul Lloyd, Marek S. Skrzypek, Stuart R. Miyasato, Matt Simison, J. Michael CherryG3: Genes, Genomes, Genetics March 2014 4: 389-398; https://doi.org/10.1534/g3.113.008995
Frisch, Matthias
- Heteroscedastic Ridge Regression Approaches for Genome-Wide Prediction With a Focus on Computational Efficiency and Accurate Effect EstimationNina Hofheinz, Matthias FrischG3: Genes, Genomes, Genetics March 2014 4: 539-546; https://doi.org/10.1534/g3.113.010025
Fujiyama, Asao
- Genomic and Phenotypic Characterization of a Wild Medaka Population: Towards the Establishment of an Isogenic Population Genetic Resource in FishMikhail Spivakov, Thomas O. Auer, Ravindra Peravali, Ian Dunham, Dirk Dolle, Asao Fujiyama, Atsushi Toyoda, Tomoyuki Aizu, Yohei Minakuchi, Felix Loosli, Kiyoshi Naruse, Ewan Birney, Joachim WittbrodtG3: Genes, Genomes, Genetics March 2014 4: 433-445; https://doi.org/10.1534/g3.113.008722
G
Gaur, Deepika
- The BAG Homology Domain of Snl1 Cures Yeast Prion [URE3] Through Regulation of Hsp70 ChaperonesNavinder Kumar, Deepika Gaur, Daniel C. Masison, Deepak SharmaG3: Genes, Genomes, Genetics March 2014 4: 461-470; https://doi.org/10.1534/g3.113.009993
Gostan, Thierry
- Metabolic and Environmental Conditions Determine Nuclear Genomic Instability in Budding Yeast Lacking Mitochondrial DNALéon Dirick, Walid Bendris, Vincent Loubiere, Thierry Gostan, Elisabeth Gueydon, Etienne SchwobG3: Genes, Genomes, Genetics March 2014 4: 411-423; https://doi.org/10.1534/g3.113.010108
Gueydon, Elisabeth
- Metabolic and Environmental Conditions Determine Nuclear Genomic Instability in Budding Yeast Lacking Mitochondrial DNALéon Dirick, Walid Bendris, Vincent Loubiere, Thierry Gostan, Elisabeth Gueydon, Etienne SchwobG3: Genes, Genomes, Genetics March 2014 4: 411-423; https://doi.org/10.1534/g3.113.010108
H
Hanes, Steven D.
- The Yeast Ess1 Prolyl Isomerase Controls Swi6 and Whi5 Nuclear LocalizationDavid Atencio, Cassandra Barnes, Thomas M. Duncan, Ian M. Willis, Steven D. HanesG3: Genes, Genomes, Genetics March 2014 4: 523-537; https://doi.org/10.1534/g3.113.008763
Hitz, Benjamin C.
- The Reference Genome Sequence of Saccharomyces cerevisiae: Then and NowStacia R. Engel, Fred S. Dietrich, Dianna G. Fisk, Gail Binkley, Rama Balakrishnan, Maria C. Costanzo, Selina S. Dwight, Benjamin C. Hitz, Kalpana Karra, Robert S. Nash, Shuai Weng, Edith D. Wong, Paul Lloyd, Marek S. Skrzypek, Stuart R. Miyasato, Matt Simison, J. Michael CherryG3: Genes, Genomes, Genetics March 2014 4: 389-398; https://doi.org/10.1534/g3.113.008995
Hofheinz, Nina
- Heteroscedastic Ridge Regression Approaches for Genome-Wide Prediction With a Focus on Computational Efficiency and Accurate Effect EstimationNina Hofheinz, Matthias FrischG3: Genes, Genomes, Genetics March 2014 4: 539-546; https://doi.org/10.1534/g3.113.010025
Hollien, Julie
- In Vivo Determination of Direct Targets of the Nonsense-Mediated Decay Pathway in DrosophilaAlex Chapin, Hao Hu, Shawn G. Rynearson, Julie Hollien, Mark Yandell, Mark M. MetzsteinG3: Genes, Genomes, Genetics March 2014 4: 485-496; https://doi.org/10.1534/g3.113.009357
Hu, Hao
- In Vivo Determination of Direct Targets of the Nonsense-Mediated Decay Pathway in DrosophilaAlex Chapin, Hao Hu, Shawn G. Rynearson, Julie Hollien, Mark Yandell, Mark M. MetzsteinG3: Genes, Genomes, Genetics March 2014 4: 485-496; https://doi.org/10.1534/g3.113.009357
K
Karra, Kalpana
- The Reference Genome Sequence of Saccharomyces cerevisiae: Then and NowStacia R. Engel, Fred S. Dietrich, Dianna G. Fisk, Gail Binkley, Rama Balakrishnan, Maria C. Costanzo, Selina S. Dwight, Benjamin C. Hitz, Kalpana Karra, Robert S. Nash, Shuai Weng, Edith D. Wong, Paul Lloyd, Marek S. Skrzypek, Stuart R. Miyasato, Matt Simison, J. Michael CherryG3: Genes, Genomes, Genetics March 2014 4: 389-398; https://doi.org/10.1534/g3.113.008995
Kumar, Navinder
- The BAG Homology Domain of Snl1 Cures Yeast Prion [URE3] Through Regulation of Hsp70 ChaperonesNavinder Kumar, Deepika Gaur, Daniel C. Masison, Deepak SharmaG3: Genes, Genomes, Genetics March 2014 4: 461-470; https://doi.org/10.1534/g3.113.009993
L
LaRocque, Jeannine R.
- Double-Strand Break Repair Assays Determine Pathway Choice and Structure of Gene Conversion Events in Drosophila melanogasterAnthony T. Do, Joseph T. Brooks, Margot K. Le Neveu, Jeannine R. LaRocqueG3: Genes, Genomes, Genetics March 2014 4: 425-432; https://doi.org/10.1534/g3.113.010074
Large, Edward E.
- Caenorhabditis elegans SWI/SNF Subunits Control Sequential Developmental Stages in the Somatic GonadEdward E. Large, Laura D. MathiesG3: Genes, Genomes, Genetics March 2014 4: 471-483; https://doi.org/10.1534/g3.113.009852
Le Neveu, Margot K.
- Double-Strand Break Repair Assays Determine Pathway Choice and Structure of Gene Conversion Events in Drosophila melanogasterAnthony T. Do, Joseph T. Brooks, Margot K. Le Neveu, Jeannine R. LaRocqueG3: Genes, Genomes, Genetics March 2014 4: 425-432; https://doi.org/10.1534/g3.113.010074
Lloyd, Paul
- The Reference Genome Sequence of Saccharomyces cerevisiae: Then and NowStacia R. Engel, Fred S. Dietrich, Dianna G. Fisk, Gail Binkley, Rama Balakrishnan, Maria C. Costanzo, Selina S. Dwight, Benjamin C. Hitz, Kalpana Karra, Robert S. Nash, Shuai Weng, Edith D. Wong, Paul Lloyd, Marek S. Skrzypek, Stuart R. Miyasato, Matt Simison, J. Michael CherryG3: Genes, Genomes, Genetics March 2014 4: 389-398; https://doi.org/10.1534/g3.113.008995
Loosli, Felix
- Genomic and Phenotypic Characterization of a Wild Medaka Population: Towards the Establishment of an Isogenic Population Genetic Resource in FishMikhail Spivakov, Thomas O. Auer, Ravindra Peravali, Ian Dunham, Dirk Dolle, Asao Fujiyama, Atsushi Toyoda, Tomoyuki Aizu, Yohei Minakuchi, Felix Loosli, Kiyoshi Naruse, Ewan Birney, Joachim WittbrodtG3: Genes, Genomes, Genetics March 2014 4: 433-445; https://doi.org/10.1534/g3.113.008722
Loubiere, Vincent
- Metabolic and Environmental Conditions Determine Nuclear Genomic Instability in Budding Yeast Lacking Mitochondrial DNALéon Dirick, Walid Bendris, Vincent Loubiere, Thierry Gostan, Elisabeth Gueydon, Etienne SchwobG3: Genes, Genomes, Genetics March 2014 4: 411-423; https://doi.org/10.1534/g3.113.010108
M
Maggert, Keith A.
- Reduced rDNA Copy Number Does Not Affect “Competitive” Chromosome Pairing in XYY Males of Drosophila melanogasterKeith A. MaggertG3: Genes, Genomes, Genetics March 2014 4: 497-507; https://doi.org/10.1534/g3.113.008730
Masison, Daniel C.
- The BAG Homology Domain of Snl1 Cures Yeast Prion [URE3] Through Regulation of Hsp70 ChaperonesNavinder Kumar, Deepika Gaur, Daniel C. Masison, Deepak SharmaG3: Genes, Genomes, Genetics March 2014 4: 461-470; https://doi.org/10.1534/g3.113.009993
Mathies, Laura D.
- Caenorhabditis elegans SWI/SNF Subunits Control Sequential Developmental Stages in the Somatic GonadEdward E. Large, Laura D. MathiesG3: Genes, Genomes, Genetics March 2014 4: 471-483; https://doi.org/10.1534/g3.113.009852
Metzstein, Mark M.
- In Vivo Determination of Direct Targets of the Nonsense-Mediated Decay Pathway in DrosophilaAlex Chapin, Hao Hu, Shawn G. Rynearson, Julie Hollien, Mark Yandell, Mark M. MetzsteinG3: Genes, Genomes, Genetics March 2014 4: 485-496; https://doi.org/10.1534/g3.113.009357
Minakuchi, Yohei
- Genomic and Phenotypic Characterization of a Wild Medaka Population: Towards the Establishment of an Isogenic Population Genetic Resource in FishMikhail Spivakov, Thomas O. Auer, Ravindra Peravali, Ian Dunham, Dirk Dolle, Asao Fujiyama, Atsushi Toyoda, Tomoyuki Aizu, Yohei Minakuchi, Felix Loosli, Kiyoshi Naruse, Ewan Birney, Joachim WittbrodtG3: Genes, Genomes, Genetics March 2014 4: 433-445; https://doi.org/10.1534/g3.113.008722
Miyasato, Stuart R.
- The Reference Genome Sequence of Saccharomyces cerevisiae: Then and NowStacia R. Engel, Fred S. Dietrich, Dianna G. Fisk, Gail Binkley, Rama Balakrishnan, Maria C. Costanzo, Selina S. Dwight, Benjamin C. Hitz, Kalpana Karra, Robert S. Nash, Shuai Weng, Edith D. Wong, Paul Lloyd, Marek S. Skrzypek, Stuart R. Miyasato, Matt Simison, J. Michael CherryG3: Genes, Genomes, Genetics March 2014 4: 389-398; https://doi.org/10.1534/g3.113.008995
Modliszewski, Jennifer L.
- Near-Absent Levels of Segregational Variation Suggest Limited Opportunities for the Introduction of Genetic Variation Via Homeologous Chromosome Pairing in Synthetic Neoallotetraploid MimulusJennifer L. Modliszewski, John H. WillisG3: Genes, Genomes, Genetics March 2014 4: 509-522; https://doi.org/10.1534/g3.113.008441
N
Naish, Kerry A.
- A Dense Linkage Map for Chinook salmon (Oncorhynchus tshawytscha) Reveals Variable Chromosomal Divergence After an Ancestral Whole Genome Duplication EventMarine S. O. Brieuc, Charles D. Waters, James E. Seeb, Kerry A. NaishG3: Genes, Genomes, Genetics March 2014 4: 447-460; https://doi.org/10.1534/g3.113.009316
Naruse, Kiyoshi
- Genomic and Phenotypic Characterization of a Wild Medaka Population: Towards the Establishment of an Isogenic Population Genetic Resource in FishMikhail Spivakov, Thomas O. Auer, Ravindra Peravali, Ian Dunham, Dirk Dolle, Asao Fujiyama, Atsushi Toyoda, Tomoyuki Aizu, Yohei Minakuchi, Felix Loosli, Kiyoshi Naruse, Ewan Birney, Joachim WittbrodtG3: Genes, Genomes, Genetics March 2014 4: 433-445; https://doi.org/10.1534/g3.113.008722
Nash, Robert S.
- The Reference Genome Sequence of Saccharomyces cerevisiae: Then and NowStacia R. Engel, Fred S. Dietrich, Dianna G. Fisk, Gail Binkley, Rama Balakrishnan, Maria C. Costanzo, Selina S. Dwight, Benjamin C. Hitz, Kalpana Karra, Robert S. Nash, Shuai Weng, Edith D. Wong, Paul Lloyd, Marek S. Skrzypek, Stuart R. Miyasato, Matt Simison, J. Michael CherryG3: Genes, Genomes, Genetics March 2014 4: 389-398; https://doi.org/10.1534/g3.113.008995
O
Oldroyd, Benjamin P.
- Whole-Genome DNA Methylation Profile of the Jewel Wasp (Nasonia vitripennis)Suzannah M. Beeler, Garrett T. Wong, Jennifer M. Zheng, Eliot C. Bush, Emily J. Remnant, Benjamin P. Oldroyd, Robert A. DrewellG3: Genes, Genomes, Genetics March 2014 4: 383-388; https://doi.org/10.1534/g3.113.008953
Ong, Giang T.
- The Dynamics of Diverse Segmental Amplifications in Populations of Saccharomyces cerevisiae Adapting to Strong SelectionCelia Payen, Sara C. Di Rienzi, Giang T. Ong, Jamie L. Pogachar, Joseph C. Sanchez, Anna B. Sunshine, M. K. Raghuraman, Bonita J. Brewer, Maitreya J. DunhamG3: Genes, Genomes, Genetics March 2014 4: 399-409; https://doi.org/10.1534/g3.113.009365
P
Parts, Leopold
- gitter: A Robust and Accurate Method for Quantification of Colony Sizes From Plate ImagesOmar Wagih, Leopold PartsG3: Genes, Genomes, Genetics March 2014 4: 547-552; https://doi.org/10.1534/g3.113.009431
Payen, Celia
- The Dynamics of Diverse Segmental Amplifications in Populations of Saccharomyces cerevisiae Adapting to Strong SelectionCelia Payen, Sara C. Di Rienzi, Giang T. Ong, Jamie L. Pogachar, Joseph C. Sanchez, Anna B. Sunshine, M. K. Raghuraman, Bonita J. Brewer, Maitreya J. DunhamG3: Genes, Genomes, Genetics March 2014 4: 399-409; https://doi.org/10.1534/g3.113.009365
Peravali, Ravindra
- Genomic and Phenotypic Characterization of a Wild Medaka Population: Towards the Establishment of an Isogenic Population Genetic Resource in FishMikhail Spivakov, Thomas O. Auer, Ravindra Peravali, Ian Dunham, Dirk Dolle, Asao Fujiyama, Atsushi Toyoda, Tomoyuki Aizu, Yohei Minakuchi, Felix Loosli, Kiyoshi Naruse, Ewan Birney, Joachim WittbrodtG3: Genes, Genomes, Genetics March 2014 4: 433-445; https://doi.org/10.1534/g3.113.008722
Pogachar, Jamie L.
- The Dynamics of Diverse Segmental Amplifications in Populations of Saccharomyces cerevisiae Adapting to Strong SelectionCelia Payen, Sara C. Di Rienzi, Giang T. Ong, Jamie L. Pogachar, Joseph C. Sanchez, Anna B. Sunshine, M. K. Raghuraman, Bonita J. Brewer, Maitreya J. DunhamG3: Genes, Genomes, Genetics March 2014 4: 399-409; https://doi.org/10.1534/g3.113.009365
R
Raghuraman, M. K.
- The Dynamics of Diverse Segmental Amplifications in Populations of Saccharomyces cerevisiae Adapting to Strong SelectionCelia Payen, Sara C. Di Rienzi, Giang T. Ong, Jamie L. Pogachar, Joseph C. Sanchez, Anna B. Sunshine, M. K. Raghuraman, Bonita J. Brewer, Maitreya J. DunhamG3: Genes, Genomes, Genetics March 2014 4: 399-409; https://doi.org/10.1534/g3.113.009365
Remnant, Emily J.
- Whole-Genome DNA Methylation Profile of the Jewel Wasp (Nasonia vitripennis)Suzannah M. Beeler, Garrett T. Wong, Jennifer M. Zheng, Eliot C. Bush, Emily J. Remnant, Benjamin P. Oldroyd, Robert A. DrewellG3: Genes, Genomes, Genetics March 2014 4: 383-388; https://doi.org/10.1534/g3.113.008953
Rynearson, Shawn G.
- In Vivo Determination of Direct Targets of the Nonsense-Mediated Decay Pathway in DrosophilaAlex Chapin, Hao Hu, Shawn G. Rynearson, Julie Hollien, Mark Yandell, Mark M. MetzsteinG3: Genes, Genomes, Genetics March 2014 4: 485-496; https://doi.org/10.1534/g3.113.009357
S
Sanchez, Joseph C.
- The Dynamics of Diverse Segmental Amplifications in Populations of Saccharomyces cerevisiae Adapting to Strong SelectionCelia Payen, Sara C. Di Rienzi, Giang T. Ong, Jamie L. Pogachar, Joseph C. Sanchez, Anna B. Sunshine, M. K. Raghuraman, Bonita J. Brewer, Maitreya J. DunhamG3: Genes, Genomes, Genetics March 2014 4: 399-409; https://doi.org/10.1534/g3.113.009365
Schwob, Etienne
- Metabolic and Environmental Conditions Determine Nuclear Genomic Instability in Budding Yeast Lacking Mitochondrial DNALéon Dirick, Walid Bendris, Vincent Loubiere, Thierry Gostan, Elisabeth Gueydon, Etienne SchwobG3: Genes, Genomes, Genetics March 2014 4: 411-423; https://doi.org/10.1534/g3.113.010108
Seeb, James E.
- A Dense Linkage Map for Chinook salmon (Oncorhynchus tshawytscha) Reveals Variable Chromosomal Divergence After an Ancestral Whole Genome Duplication EventMarine S. O. Brieuc, Charles D. Waters, James E. Seeb, Kerry A. NaishG3: Genes, Genomes, Genetics March 2014 4: 447-460; https://doi.org/10.1534/g3.113.009316
Sharma, Deepak
- The BAG Homology Domain of Snl1 Cures Yeast Prion [URE3] Through Regulation of Hsp70 ChaperonesNavinder Kumar, Deepika Gaur, Daniel C. Masison, Deepak SharmaG3: Genes, Genomes, Genetics March 2014 4: 461-470; https://doi.org/10.1534/g3.113.009993
Simison, Matt
- The Reference Genome Sequence of Saccharomyces cerevisiae: Then and NowStacia R. Engel, Fred S. Dietrich, Dianna G. Fisk, Gail Binkley, Rama Balakrishnan, Maria C. Costanzo, Selina S. Dwight, Benjamin C. Hitz, Kalpana Karra, Robert S. Nash, Shuai Weng, Edith D. Wong, Paul Lloyd, Marek S. Skrzypek, Stuart R. Miyasato, Matt Simison, J. Michael CherryG3: Genes, Genomes, Genetics March 2014 4: 389-398; https://doi.org/10.1534/g3.113.008995
Skrzypek, Marek S.
- The Reference Genome Sequence of Saccharomyces cerevisiae: Then and NowStacia R. Engel, Fred S. Dietrich, Dianna G. Fisk, Gail Binkley, Rama Balakrishnan, Maria C. Costanzo, Selina S. Dwight, Benjamin C. Hitz, Kalpana Karra, Robert S. Nash, Shuai Weng, Edith D. Wong, Paul Lloyd, Marek S. Skrzypek, Stuart R. Miyasato, Matt Simison, J. Michael CherryG3: Genes, Genomes, Genetics March 2014 4: 389-398; https://doi.org/10.1534/g3.113.008995
Spivakov, Mikhail
- Genomic and Phenotypic Characterization of a Wild Medaka Population: Towards the Establishment of an Isogenic Population Genetic Resource in FishMikhail Spivakov, Thomas O. Auer, Ravindra Peravali, Ian Dunham, Dirk Dolle, Asao Fujiyama, Atsushi Toyoda, Tomoyuki Aizu, Yohei Minakuchi, Felix Loosli, Kiyoshi Naruse, Ewan Birney, Joachim WittbrodtG3: Genes, Genomes, Genetics March 2014 4: 433-445; https://doi.org/10.1534/g3.113.008722
Sunshine, Anna B.
- The Dynamics of Diverse Segmental Amplifications in Populations of Saccharomyces cerevisiae Adapting to Strong SelectionCelia Payen, Sara C. Di Rienzi, Giang T. Ong, Jamie L. Pogachar, Joseph C. Sanchez, Anna B. Sunshine, M. K. Raghuraman, Bonita J. Brewer, Maitreya J. DunhamG3: Genes, Genomes, Genetics March 2014 4: 399-409; https://doi.org/10.1534/g3.113.009365
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Toyoda, Atsushi
- Genomic and Phenotypic Characterization of a Wild Medaka Population: Towards the Establishment of an Isogenic Population Genetic Resource in FishMikhail Spivakov, Thomas O. Auer, Ravindra Peravali, Ian Dunham, Dirk Dolle, Asao Fujiyama, Atsushi Toyoda, Tomoyuki Aizu, Yohei Minakuchi, Felix Loosli, Kiyoshi Naruse, Ewan Birney, Joachim WittbrodtG3: Genes, Genomes, Genetics March 2014 4: 433-445; https://doi.org/10.1534/g3.113.008722
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Wagih, Omar
- gitter: A Robust and Accurate Method for Quantification of Colony Sizes From Plate ImagesOmar Wagih, Leopold PartsG3: Genes, Genomes, Genetics March 2014 4: 547-552; https://doi.org/10.1534/g3.113.009431
Waters, Charles D.
- A Dense Linkage Map for Chinook salmon (Oncorhynchus tshawytscha) Reveals Variable Chromosomal Divergence After an Ancestral Whole Genome Duplication EventMarine S. O. Brieuc, Charles D. Waters, James E. Seeb, Kerry A. NaishG3: Genes, Genomes, Genetics March 2014 4: 447-460; https://doi.org/10.1534/g3.113.009316
Weng, Shuai
- The Reference Genome Sequence of Saccharomyces cerevisiae: Then and NowStacia R. Engel, Fred S. Dietrich, Dianna G. Fisk, Gail Binkley, Rama Balakrishnan, Maria C. Costanzo, Selina S. Dwight, Benjamin C. Hitz, Kalpana Karra, Robert S. Nash, Shuai Weng, Edith D. Wong, Paul Lloyd, Marek S. Skrzypek, Stuart R. Miyasato, Matt Simison, J. Michael CherryG3: Genes, Genomes, Genetics March 2014 4: 389-398; https://doi.org/10.1534/g3.113.008995
Willis, Ian M.
- The Yeast Ess1 Prolyl Isomerase Controls Swi6 and Whi5 Nuclear LocalizationDavid Atencio, Cassandra Barnes, Thomas M. Duncan, Ian M. Willis, Steven D. HanesG3: Genes, Genomes, Genetics March 2014 4: 523-537; https://doi.org/10.1534/g3.113.008763
Willis, John H.
- Near-Absent Levels of Segregational Variation Suggest Limited Opportunities for the Introduction of Genetic Variation Via Homeologous Chromosome Pairing in Synthetic Neoallotetraploid MimulusJennifer L. Modliszewski, John H. WillisG3: Genes, Genomes, Genetics March 2014 4: 509-522; https://doi.org/10.1534/g3.113.008441
Wittbrodt, Joachim
- Genomic and Phenotypic Characterization of a Wild Medaka Population: Towards the Establishment of an Isogenic Population Genetic Resource in FishMikhail Spivakov, Thomas O. Auer, Ravindra Peravali, Ian Dunham, Dirk Dolle, Asao Fujiyama, Atsushi Toyoda, Tomoyuki Aizu, Yohei Minakuchi, Felix Loosli, Kiyoshi Naruse, Ewan Birney, Joachim WittbrodtG3: Genes, Genomes, Genetics March 2014 4: 433-445; https://doi.org/10.1534/g3.113.008722
Wong, Edith D.
- The Reference Genome Sequence of Saccharomyces cerevisiae: Then and NowStacia R. Engel, Fred S. Dietrich, Dianna G. Fisk, Gail Binkley, Rama Balakrishnan, Maria C. Costanzo, Selina S. Dwight, Benjamin C. Hitz, Kalpana Karra, Robert S. Nash, Shuai Weng, Edith D. Wong, Paul Lloyd, Marek S. Skrzypek, Stuart R. Miyasato, Matt Simison, J. Michael CherryG3: Genes, Genomes, Genetics March 2014 4: 389-398; https://doi.org/10.1534/g3.113.008995
Wong, Garrett T.
- Whole-Genome DNA Methylation Profile of the Jewel Wasp (Nasonia vitripennis)Suzannah M. Beeler, Garrett T. Wong, Jennifer M. Zheng, Eliot C. Bush, Emily J. Remnant, Benjamin P. Oldroyd, Robert A. DrewellG3: Genes, Genomes, Genetics March 2014 4: 383-388; https://doi.org/10.1534/g3.113.008953
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Yandell, Mark
- In Vivo Determination of Direct Targets of the Nonsense-Mediated Decay Pathway in DrosophilaAlex Chapin, Hao Hu, Shawn G. Rynearson, Julie Hollien, Mark Yandell, Mark M. MetzsteinG3: Genes, Genomes, Genetics March 2014 4: 485-496; https://doi.org/10.1534/g3.113.009357
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Zheng, Jennifer M.
- Whole-Genome DNA Methylation Profile of the Jewel Wasp (Nasonia vitripennis)Suzannah M. Beeler, Garrett T. Wong, Jennifer M. Zheng, Eliot C. Bush, Emily J. Remnant, Benjamin P. Oldroyd, Robert A. DrewellG3: Genes, Genomes, Genetics March 2014 4: 383-388; https://doi.org/10.1534/g3.113.008953